Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g1986 ATGAATGCCAATACCCATGTGATGTTATCTCTTTTCCTCGTCTTGTTCGGGCTCTTCAATGGCGTTTTTTCTGCTGATGTTGTTGCTTCAGACCCGCCATTGTTGTTGCGTTGTGGTTCGAATGAGGAGGCCACCGATGATAATGGCCGGAAATGGACCTCCGATTCGAAATTCCTCGACCCCAAAAATACCATAACTGCACCGGTGGGATTTCAAGATCCGTCGATGACATCGCAGGTTCCGTACATGGAGGCTAGGGTTTTCACTGCCGCGACGACGTATAAATTTCCGATCAAACCTGGTAGTCGCTATTGGCTTCGACTCCATTTTTACCCTTCCACTTACGGCACTCATGATTCTACTAATTCCTTTTCCACCGTCGCGGCGAATGATTTGATCCTTGCGAAGAATTTTAGCGCTTATCTCACATGTCAGGCTTTCACTCAGGCTTACATTGTGCGCGAATTTTCTCTCGCGGCATCGGAATCTGACACGCTAAATTTGATCTTCACCCCTGTTTCAGGATTTGCTTTTGTTAATGGGATTGAATTGATTCAAATGCCGGAGATCTTTGGGCAGGCTGTAATGGTTGGTCCAGGGCAGCAATCTATGGATGTATCAAAGTCGAATATGCAGACGATGGTGAGATTGAACGTCGGCGGGAGCTACATTTCTCCAGCAAACGATTCCGGTCTGAGTAGAGCATGGTATGATGATTATCCTTATCTTTTTGGTGCTGCTGCGGGTATTGTGACGGAAGCTTCTGCGAAGTTGGCGATTGATTATAAGGATATGCCGAAATATATTGCGCCTGTGGAACTTTACAGGTCATTGAGATCAATGGGGTCAGATAAGAACGTGAATATGAATTACAATTTGACATGGTTGTTTCCTAATATTGATCCAGGGTTCTTGTATCTTATGAGGTTGCATTTCTGTGATCTGACTCTGAGTAGGCCAAATCAGGTGGTGTTTGATGTGTTCATCAACAATCAAACAGCGGACGTGTCTGGGATTGATGTGATTGCTTGGGCGGGCGCTCGGGGGGTTCCGGTATTCCTGGATTATGTTGTGTTTGCACCAGTAGCACCTACAATGCAGCAGATTTGGCTGGCATTGCATCCTAAGATGACGGATAAACCCGAGTTTGCGGATTCTATGTTGAATGGTGTTGAGATATTCAAGCTCGAATCGGGGAAGAACTTGGCAGGGAAGAATCCTCAACCCTCGGCATTCAGGATGAAGGTTGAGGCAGAAACAGAGAGAAATTTTGAAACAAAGGGCAGAAATGCTGAAGTGATTGGAGGGGCTGCAGGGGGGGCTGCAGCTTTTGTTGTGGTGGCACTTTGCTTTGCTGTGTACCAAAGGAAGAACAGAATGCCAGGGGCTGATTCACACACAACTAGCTGGTTGCCGATCTATGGGAATTCGCATTCAAGTGGGAGCAAATCGACGGTGTCTGGGAAAAGTACGGCGAGTAATTTGGCGCAAGGTTTGGCCCGGCATTTTTCACTTTCAGAGATTTTACATGCTACCAAGAACTTTAGTGAGTCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGGTTGATGGAGGAACGAAAGTTGCTATTAAAAGGTCTAATCCGTCATCGGAACAAGGAGTTCACGAGTTCCTTACAGAAATCGATTTGCTTTCGAAGCTGAGGCACAAACATTTGGTGTCCTTGATTGGTTTTTGTGACGAAGAGAATGAAATGTGTTTGGTTTATGATTATATGGGTTTGGGAACTCTGAGGGAACATCTGTATAAGACCAATAATAAAGCTCGTCTCCCATGGAAGCAAAGGCTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCACTACCTTCACACAGGAGCACAGTACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTTGGGCTCTCAAAAACTGGTCCGAACATGTCTACTGGTCATGTTAGCACAGTAGTTAAGGGTAGTTTTGGCTACTTAGATCCAGAGTACTTCCGAAGGCAACAATTGACTGAAAAATCTGATGTCTATTCTTTTGGAGTTGTCCTGTTTGAAGTGTTGTGTGCAAGGCCTGCTCTAAATCCAAGCCTGCCGAAGGAACAGGTTAGTCTTGCCGATTGGGCGTTGCACTGCAAACGGAAAGGAGTCCTTGACGATCTCATCGATCCCTACCTCAAAGGGAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCTGATGCAGCGGAGAAATGCCTGGATGACCATGGAGCCGAGCGACCATCTATGGGCGATGTGTTGTGGAACCTTGAATTTGCTCTTCAACTTCAAGAAAGTGCCGATGGTGGTGGTTCAAGTCGCAGCTCGAGGATAGACGATGAAGACAGCCAGAGAAGCCGAGACATGTCTGCACATTACAATAACCTCAGCCTTGGAAGTGAGGAAGAGTTACTTCAATCTAATGAGCAAAACAGTACTGCAATCTTCTCTCAACTTGTCCATCCGAAAGGCCGATGA 2565 45.85 MNANTHVMLSLFLVLFGLFNGVFSADVVASDPPLLLRCGSNEEATDDNGRKWTSDSKFLDPKNTITAPVGFQDPSMTSQVPYMEARVFTAATTYKFPIKPGSRYWLRLHFYPSTYGTHDSTNSFSTVAANDLILAKNFSAYLTCQAFTQAYIVREFSLAASESDTLNLIFTPVSGFAFVNGIELIQMPEIFGQAVMVGPGQQSMDVSKSNMQTMVRLNVGGSYISPANDSGLSRAWYDDYPYLFGAAAGIVTEASAKLAIDYKDMPKYIAPVELYRSLRSMGSDKNVNMNYNLTWLFPNIDPGFLYLMRLHFCDLTLSRPNQVVFDVFINNQTADVSGIDVIAWAGARGVPVFLDYVVFAPVAPTMQQIWLALHPKMTDKPEFADSMLNGVEIFKLESGKNLAGKNPQPSAFRMKVEAETERNFETKGRNAEVIGGAAGGAAAFVVVALCFAVYQRKNRMPGADSHTTSWLPIYGNSHSSGSKSTVSGKSTASNLAQGLARHFSLSEILHATKNFSESNVIGVGGFGKVYKGVVDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGLGTLREHLYKTNNKARLPWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMSTGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGVLDDLIDPYLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGGSSRSSRIDDEDSQRSRDMSAHYNNLSLGSEEELLQSNEQNSTAIFSQLVHPKGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46267795 46270359 + Maker00003308 Lcy4g1986 631512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g1986 854 Gene3D - 34 188 - -
Lcy4g1986 854 Gene3D - 209 397 - -
Lcy4g1986 854 FunFam receptor-like protein kinase FERONIA 477 590 - -
Lcy4g1986 854 Gene3D Transferase(Phosphotransferase) domain 1 591 806 - -
Lcy4g1986 854 CDD STKc_IRAK 521 787 - -
Lcy4g1986 854 SMART serkin_6 515 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1986 854 PANTHER OS07G0166700 PROTEIN 503 794 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lcy4g1986 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1986 854 MobiDBLite consensus disorder prediction 818 839 - -
Lcy4g1986 854 MobiDBLite consensus disorder prediction 795 839 - -
Lcy4g1986 854 Pfam Protein tyrosine and serine/threonine kinase 518 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g1986 854 FunFam Receptor-like protein kinase FERONIA 591 805 - -
Lcy4g1986 854 SUPERFAMILY Protein kinase-like (PK-like) 500 784 IPR011009 -
Lcy4g1986 854 Pfam Malectin-like domain 37 395 IPR024788 -
Lcy4g1986 854 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524(InterPro)
Lcy4g1986 854 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Lcy4g1986 854 ProSiteProfiles Protein kinase domain profile. 515 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g1986 854 FunFam FERONIA receptor-like kinase 209 397 - -
Lcy4g1986 854 MobiDBLite consensus disorder prediction 803 817 - -
Lcy4g1986 854 FunFam FERONIA receptor-like kinase 33 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1627 Lcy-Chr1:16630317 Lcy4g1986 Lcy-Chr4:46267795 4.42E-283 dispersed
Lcy3g0263 Lcy-Chr3:8579932 Lcy4g1986 Lcy-Chr4:46267795 5.98E-194 dispersed
Lcy3g0278 Lcy-Chr3:9050272 Lcy4g1986 Lcy-Chr4:46267795 3.58E-63 dispersed
Lcy4g1986 Lcy-Chr4:46267795 Lcy9g1271 Lcy-Chr9:37310086 2.36E-209 dispersed
Lcy4g1986 Lcy-Chr4:46267795 Lcy3g0245 Lcy-Chr3:7572141 5.61E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65878 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g1986 - - - 0.0