Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2008 | GGTACTCCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAGGATCCAGAAGTTGCTTGGCTTGATGGACAGGTCAACAAGATTACAGGGCAGGAAGCTGAGATCGAAGCCAGCAATGGAAAAAAGGTTACTGCAAAACTGGCCAAAATATACCCAAAAGATGTGGAGGCTCCAGCTGGTGGCGTTGATGACATGACAAAGCTATCTTACTTGCATGAGCCTGGAGTTCTACAAAATTTAAAAATTCGATATGAACTCAATGAGATCTATACTTACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCAACAATACAAAGGAGCACCATTTGGAGAATTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATTAATGAGGGTAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAAATGCTCATGCGATACCTTGCATTTTTAGGGGGTCGAGCAGCCACCGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGGTCATTTCATTATCTTAATCAATCAAATTGCTACGAACTGGTTGATGTAAGTGATGCTCATGACTATCTAGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCTAAGGAGCAGGAAGCAATCTTTAGGGTTGTTGCTGCAATTCTTCATCTTGGAAACATTGAATTCACCAAGGGCAAAGATGTTGATTCATCAGTTCCAAAAGATGACAGGGCCAAATTTCATCTTAAAATGACTTCAGAACTCCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTGATAAAACGTAGCTTGGATCCTCAAAGTGCGGCTGTTAGCCGTGACGGTTTGGCCAAAACCATATATTCTCGACTATTTGACTGGCTGGTTGATAAAATTAATGTCTCCATTGGACAAGATCCTAATTCCAAGTCCCTGATTGGGGTCCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACTAAAGAAGAGATTGATTGGAGTTACATTGAGTTTGTCGACAACCAAGATGTGTTGGATCTCATTGAAAAGAAACCTGGTGGAATTGTGGCTCTCCTTGACGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTTATAAAGCCAAAACTTTCTCGAACAGATTTTACCATCGCTCATTATGCTGGAGAGGTTTTATATCAATCTGATCAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAACATCAGGATTTGTTGGGTGCCTCCAAATGTTCATTTGTGGCTGGCCTTTTCCCACCACTAAAAGAAGAATCTGCAAAATCTTCCAAGTTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAATCTTTAATGGAGACATTAAATTCCACAGAACCTCACTACATCAGATGTGTGAAGCCAAACAACCTCTTAAAACCTGCCATCTTTGAGAATGTCAACATAATGCAACAACTTCGTTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCAGGGTACCCTACTCGCCGTGCATTCTTTGAATTCATCAACCGATTTGGAATTTTAGCTCAAGAATCTTTGGAAGGAAAAGGATTTAATATTCTTCATTTTGAAACCACCTTCTTTTTCTTGGTGAGCAGCTATGATGAGAAAACTGTGTGCAAAAAGATATTAGAAAAGCAGGGACTTAAAGGGTTTCAGATAGGTAAGACAAAAGTATTCCTGAGGGCTGGCCAGATGGCTGAATTAGATGCTCGGAGAGCAGAGGTGCTGAGTAATGCAGCAAAGACTATTCAGCGGCGCACACGAACCCATATTGCTCGCAAACAGTTCATTGCATTACGAAAGGCAACCATACATGTGCAATCTAGGTGGAGAGGAAAACTGGCTTGCAAACTCTACAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTCGAAGATTTCATGCGAGAAAATCCTATAAAAGGCTACAAAGTTCAGTGCTTATTGTGCAAACTGGTTTAAGGGCGATGGCAGCTAGGAATGAATTCAGATTTAGGAAGCAGACAAAGGCAGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCATACTATAAGAGACTTCAGAGAGGCTCAATAATTGCACAATGTAGATGGAGGGGAAAAGTTGCAAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACAGGTGCACTTAAAGAAGCAAAGGATAAGTTGGAAAAGAAAGTGGAGGAACTTACTTGGCGCATACAATTAGAAAAACGTCTAAGGACGGACCTGGAAGAGGCAAAAGCACAGGAGATAGCGAAATTCCAAAATATTGTGCAAGAACTTCAGGCAAAAGTTGATGAAACAAACTCGCTGCTTGCAAAGGAGCGAGAAGCTGTGAAGAAGGCAATTGAAGAAGCACCTCCTGTTATACAAGAAACCCAAGTTCTAGTGGAAGATACTAAGAAAATTGATGATTTGACAGCAGAAGTAGAAAGCTTAAAGACCTCACTGGAGACAGAGAAAAACAGAGCTGATGAATATGAGAAAAAATGTGGTGAAGTAGAACAGTCTAGAGAAGAACAACGTAAAAAGTTAGAAGACACTGAGAAAAAAGCTCATCAGCTCCAGGAATCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGCCAACAAGCTGTGTCTATGGCACCTAATAAACTTCTCTCAGGACGGTCTAGATCAATTCTTCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTACACAGTCCTTCTATTAACCAGAGGGATTCAGAAGTAGAGGATAAACCTCAAAAATCACTAAATGAGAAACAGCAAGAGAATCAAGAATTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCATCAAACAGGCCAATTGCTGCTTGTATCATCTACAAGTGCCTGCTTCAGTGGAGGTCATTTGAAGTTGAACGCACCAGTGTATTCGATAGGATAATTCAAACTATAGGCCATGCAATTGAGACCCAGGATAACAATGACGTCTTGGCCTATTGGTTATCCAACGCTTCGACGCTTCTCTTACTGCTTCAGCGCACTTTGAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAGCGTCGGCGATCATCATCAGCTACCCTATTTGGGAGGATGACTCAAAGTTTCCGAGGAGCTCCACAAGGTGTCAATCTATCCTTAATCAATGGCGGAACTAGTGGCGGAGTGGACACTTTAAGGCAAGTTGAAGCGAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATAAGAGACAATTTGAAGAAAGAAATTTCTCCGTTGCTAGGATTGTGCATCCAGGCACCAAGAACATCAAGAGCAAGTTTGGTGAAGGGATCATCTCGTTCTGTTGCCACCACAGAGGCCCAGCGTGCCTTAATTGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGAAACTTCTTAAACACCTTAAAAGCAAATCATGTACCTCCATTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGCAAATATGTTTTCTTTTTTGCCAGTCTTCTATTACGAAGAGAGTGTTGTTCATTTAGCAATGGTGAATATGTGAAAGCTGGGCTGTCTGAATTAGAGCATTGGTGTTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTAAAGCATATAAGACAAGCGATCGGGTTTCTGGTCATACATCAGAAACCAAAGAAAACGCTAGACGAAATAAGTCACGATCTATGCCCTGTACTAAGCATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAGTATGGCACGCATAGTGTTTCTCCTGATGTTATATCCAATATGAGGGTGTTAATGACCGAAGATTCGAATCATGCAATTAGCAATTCATTTCTATTGGACGACGATTCAAGCATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAACAAATAGACATCGGAGACATCGAACCACCACCACTGATTCGGGAGAACTCAGGCTTTAGTTTCTTGTTACCACGAACAGACTAA | 4470 | 41.12 | GTPVNIIVGSHVWIEDPEVAWLDGQVNKITGQEAEIEASNGKKVTAKLAKIYPKDVEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSRSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIEFTKGKDVDSSVPKDDRAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEGKGFNILHFETTFFFLVSSYDEKTVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKLYKNLKREAAAVKIQKNARRFHARKSYKRLQSSVLIVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYKRLQRGSIIAQCRWRGKVARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKFQNIVQELQAKVDETNSLLAKEREAVKKAIEEAPPVIQETQVLVEDTKKIDDLTAEVESLKTSLETEKNRADEYEKKCGEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKLLSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFASNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVNLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSKYVFFFASLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD | 1489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 46557902 | 46571225 | - | Maker00003534 | Lcy4g2008 | 631534 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2008 | 1489 | ProSiteProfiles | IQ motif profile. | 783 | 810 | - | - | |
| Lcy4g2008 | 1489 | SMART | DIL_2 | 1299 | 1414 | IPR002710 | - | |
| Lcy4g2008 | 1489 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 247 | 536 | - | - | |
| Lcy4g2008 | 1489 | SMART | MYSc_2a | 55 | 685 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | Pfam | DIL domain | 1300 | 1411 | IPR002710 | - | |
| Lcy4g2008 | 1489 | PRINTS | Myosin heavy chain signature | 195 | 222 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | PRINTS | Myosin heavy chain signature | 91 | 110 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | PRINTS | Myosin heavy chain signature | 148 | 173 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | SMART | iq_5 | 709 | 731 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | SMART | iq_5 | 686 | 708 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | ProSiteProfiles | IQ motif profile. | 758 | 787 | - | - | |
| Lcy4g2008 | 1489 | Pfam | Myosin N-terminal SH3-like domain | 8 | 49 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | FunFam | unconventional myosin-Va | 786 | 833 | - | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | Myosin motor domain profile. | 61 | 684 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | MobiDBLite | consensus disorder prediction | 941 | 981 | - | - | |
| Lcy4g2008 | 1489 | FunFam | Myosin 2 | 247 | 362 | - | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | Dilute domain profile. | 1111 | 1432 | IPR002710 | - | |
| Lcy4g2008 | 1489 | Gene3D | Kinesin motor domain | 27 | 213 | IPR036961 | - | |
| Lcy4g2008 | 1489 | Gene3D | Kinesin motor domain | 358 | 597 | IPR036961 | - | |
| Lcy4g2008 | 1489 | MobiDBLite | consensus disorder prediction | 1025 | 1063 | - | - | |
| Lcy4g2008 | 1489 | FunFam | unconventional myosin-Va | 738 | 785 | - | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | IQ motif profile. | 710 | 739 | - | - | |
| Lcy4g2008 | 1489 | Pfam | IQ calmodulin-binding motif | 737 | 756 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | Pfam | IQ calmodulin-binding motif | 711 | 731 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | Pfam | IQ calmodulin-binding motif | 784 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | Pfam | IQ calmodulin-binding motif | 810 | 827 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | Pfam | IQ calmodulin-binding motif | 689 | 707 | IPR000048 | GO:0005515(InterPro) | |
| Lcy4g2008 | 1489 | Pfam | Myosin head (motor domain) | 213 | 672 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | Gene3D | - | 374 | 558 | - | - | |
| Lcy4g2008 | 1489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 38 | 737 | IPR027417 | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 7 | 56 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy4g2008 | 1489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 737 | 835 | IPR027417 | - | |
| Lcy4g2008 | 1489 | CDD | MYSc_Myo11 | 75 | 672 | IPR036018 | - | |
| Lcy4g2008 | 1489 | Coils | Coil | 920 | 1003 | - | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | IQ motif profile. | 735 | 762 | - | - | |
| Lcy4g2008 | 1489 | PANTHER | MYOSIN | 212 | 783 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0009860(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy4g2008 | 1489 | Coils | Coil | 868 | 909 | - | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | IQ motif profile. | 687 | 714 | - | - | |
| Lcy4g2008 | 1489 | FunFam | Class V myosin | 374 | 510 | - | - | |
| Lcy4g2008 | 1489 | Coils | Coil | 829 | 863 | - | - | |
| Lcy4g2008 | 1489 | FunFam | unconventional myosin-Va | 689 | 737 | - | - | |
| Lcy4g2008 | 1489 | CDD | MyosinXI_CBD | 1062 | 1455 | IPR037975 | GO:0007015(InterPro) | |
| Lcy4g2008 | 1489 | Gene3D | - | 785 | 834 | - | - | |
| Lcy4g2008 | 1489 | Gene3D | - | 685 | 736 | - | - | |
| Lcy4g2008 | 1489 | Gene3D | - | 737 | 784 | - | - | |
| Lcy4g2008 | 1489 | Gene3D | - | 214 | 245 | - | - | |
| Lcy4g2008 | 1489 | Gene3D | - | 602 | 682 | - | - | |
| Lcy4g2008 | 1489 | ProSiteProfiles | IQ motif profile. | 806 | 835 | - | - | |
| Lcy4g2008 | 1489 | MobiDBLite | consensus disorder prediction | 1046 | 1062 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0944 | Lcy-Chr2:8748138 | Lcy4g2008 | Lcy-Chr4:46557902 | 0 | dispersed | |
| Lcy3g1286 | Lcy-Chr3:38842502 | Lcy4g2008 | Lcy-Chr4:46557902 | 7.68E-219 | dispersed | |
| Lcy3g1429 | Lcy-Chr3:41012173 | Lcy4g2008 | Lcy-Chr4:46557902 | 0 | dispersed | |
| Lcy3g1965 | Lcy-Chr3:46777971 | Lcy4g2008 | Lcy-Chr4:46557902 | 0 | dispersed | |
| Lcy4g2008 | Lcy-Chr4:46557902 | Lcy7g0780 | Lcy-Chr7:7488959 | 9.79E-131 | dispersed | |
| Lcy4g2008 | Lcy-Chr4:46557902 | Lcy3g1285 | Lcy-Chr3:38810644 | 2.69E-94 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g2008 | K10357 | - | csv:101206606 | 2342.77 |