Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2010 | ATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCCGGAGTTGATCATACATCGACAAGCTCCTCTGCCATGAGAAAACCAGATCTGGGGATCTCCATGAACGACAACGGCGGACCTGTTAACAGCGGTGGCGACGACGATGACGATAGAGACAACGGCTGTGATGAGCCTAAAGAAGGAGCGGTTGAAGTTCCAACCCGCCGCCCTCGTGGCCGGCCGCCAGGCTCCAAGAACAAGCCCAAGCCACCTATCTTTGTTACTAGGGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATTGCTGAGAGTGTTGCTCAATTCGCCCGACGACGACAAAGAGGTGTTTCTGTACTTAGTGGCAGCGGCACGGTAACGAATGTGACGCTCCGGCAACCGTCTGCGCCCGGTGCAGTCTTGACCCTCCACGGCCGATTCGAGATTCTTTCTTTGACTGGAACTTTTCTCCCTGGACCGGCCCCTCCCGGTTCCACCGGACTAACAATCTACTTGGCTGGCGGTCAAGGGCAGGTGGTGGGTGGCAGCGTCGTCGGGCCACTCACCGCTGCCGGTCCGGTGATGGTGATTGCTGCAACGTTTTCCAACGCGACATACGAACGATTACCCTTAGAGGAGGAAGAAGACGGCGGTGGAGGAGCACAAGGGCACGCATCGGCAGGCGGTGGCGCAGGCGACGGTTCACCACAAGGCATCGGTGGCGGAGTTGGAGATCCATCAGCTATGCCACCACTGTACAATTTACCGCCGAATTTGCTGCCGAACGGCGGCGGCGGGCAGATGAACCAGGAGGCTTATGCTTGGGCTCACGGCGGCCGGCCGTCGTTCTAA | 873 | 58.08 | MANRWWTSGQMGLPGVDHTSTSSSAMRKPDLGISMNDNGGPVNSGGDDDDDRDNGCDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEDGGGGAQGHASAGGGAGDGSPQGIGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYAWAHGGRPSF | 290 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 46595440 | 46597110 | + | Maker00003609 | Lcy4g2010 | 631536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2010 | 290 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 38 | 288 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Lcy4g2010 | 290 | MobiDBLite | consensus disorder prediction | 219 | 290 | - | - | |
| Lcy4g2010 | 290 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 94 | 221 | - | - | |
| Lcy4g2010 | 290 | MobiDBLite | consensus disorder prediction | 13 | 29 | - | - | |
| Lcy4g2010 | 290 | FunFam | AT-hook motif nuclear-localized protein | 96 | 223 | - | - | |
| Lcy4g2010 | 290 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 98 | 209 | IPR005175 | - | |
| Lcy4g2010 | 290 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Lcy4g2010 | 290 | CDD | DUF296 | 97 | 180 | IPR005175 | - | |
| Lcy4g2010 | 290 | PIRSF | ESCAROLA | 11 | 290 | IPR014476 | GO:0003680(InterPro) | |
| Lcy4g2010 | 290 | ProSiteProfiles | PPC domain profile profile. | 93 | 231 | IPR005175 | - | |
| Lcy4g2010 | 290 | Gene3D | - | 97 | 223 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g2243 | Lcy-Chr10:46222945 | Lcy4g2010 | Lcy-Chr4:46595440 | 1.44E-70 | dispersed | |
| Lcy13g0601 | Lcy-Chr13:7835251 | Lcy4g2010 | Lcy-Chr4:46595440 | 5.67E-74 | dispersed | |
| Lcy2g0394 | Lcy-Chr2:3300818 | Lcy4g2010 | Lcy-Chr4:46595440 | 4.94E-74 | dispersed | |
| Lcy2g1283 | Lcy-Chr2:13856490 | Lcy4g2010 | Lcy-Chr4:46595440 | 3.32E-42 | dispersed | |
| Lcy4g0421 | Lcy-Chr4:5099054 | Lcy4g2010 | Lcy-Chr4:46595440 | 4.41E-72 | dispersed | |
| Lcy4g2010 | Lcy-Chr4:46595440 | Lcy7g0904 | Lcy-Chr7:9115055 | 1.29E-82 | dispersed | |
| Lcy4g2010 | Lcy-Chr4:46595440 | Lcy4g2013 | Lcy-Chr4:46631615 | 6.90E-24 | proximal | |
| Lcy13g0350 | Lcy-Chr13:3921555 | Lcy4g2010 | Lcy-Chr4:46595440 | 1.18E-78 | wgd |
Pathway information