Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2013 | ATGAGAGAGAGAACAGATGTTATGGATAATCAGTACAGCAAAAGAAAAAAAGAAAAAAAAAAAAAAGGAAAAAAAAAGGCAAATCCTTTTCAAAAAAAGAAAAAGAAAATATTTATTTATTTAATAATTTTAATTTTCCAAAACACACGCTCTCTCTTTCTCTCTCTCATCTCAAAAATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAAAGTCCCACCACATCGCCGACCAATGGCCTTTTACCCTCCACCCACCACCTCTCCTCCGCCGCCGCCGCCTCCGACGCCGGCCCCCACGTCGTTTACCCTCACTCCGTCCCCTCCGCCGCCGTCTCCTCTTCCCCTCTCGAGCCCGCCCGCCGGAAGAGAGGCCGCCCGAGGAAGTACGGCACGCCGGAGGAAGCTTTAGCGGCCAAGAAAGCTGCTACCGCGTCGTCTCACTCTTCGTCCTCCAAGGCCAAGAAGGACCTCGCTTCTTCCTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAGAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACATGTCATTAATGTGGCAGCTGGTGAGGACGTGGGCCAGAAAATTATGATGTTTATGCAACAATGTAAGCGGGAAATCTGTATCCTTTCTGCATCTGGTTCAATCTCCAATGCATCTCTCCGTCAGCCAGCCACATCCGGAGGCAATATTACATATGAGGGTCGTTTCGAGATTGTTTCATTATGCGGATCTTATGTACGGACCGACATCGGAGGAAAGACTGGTGGTCTCAGTGTATGTTTGTCGAGTTCTGATGGCCATATAATAGGAGGGGGAGTTGGTGGACCGTTGAAAGCTGCTGGACCCGTGCAGGTTATTGTTGGTACCTTTGTAATTGACCCGAAGAAGGAAGTTGGTGGAGGTATTAAAGGTGATGCATCTGCTGGCAAGTTGCCCTCACCTATTGGTGGGACATCAATGTCAAATCTACGCTATGGCTCGAACATCGACTCGGGAGGTAATCAAGTCAGGGGAAATGATGAACACCAAGGTATTGGGGAGAGTCATTTCTTGCTTCAGCCCCGGGGCGTGAATCTGACATCCCCGCGATCTACGGACTGGAGGACGGGTCTGGATGCCACAAACACTGCTTATGATTTGACAGGAAGAACGCATCATTCTCCTGAAAACGGAGATTACGATCAGATTCCCGATTGA | 1263 | 49.17 | MRERTDVMDNQYSKRKKEKKKKGKKKANPFQKKKKKIFIYLIILIFQNTRSLFLSLISKMEPNENQLSSYFHHHQHHHQSPTTSPTNGLLPSTHHLSSAAAASDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKDLASSSSLNAVSASSSFSAPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMMFMQQCKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLCGSYVRTDIGGKTGGLSVCLSSSDGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEVGGGIKGDASAGKLPSPIGGTSMSNLRYGSNIDSGGNQVRGNDEHQGIGESHFLLQPRGVNLTSPRSTDWRTGLDATNTAYDLTGRTHHSPENGDYDQIPD | 420 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 46631615 | 46639024 | - | Maker00003527 | Lcy4g2013 | 631539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2013 | 420 | ProSiteProfiles | PPC domain profile profile. | 196 | 337 | IPR005175 | - | |
| Lcy4g2013 | 420 | MobiDBLite | consensus disorder prediction | 151 | 168 | - | - | |
| Lcy4g2013 | 420 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 199 | 313 | - | - | |
| Lcy4g2013 | 420 | CDD | DUF296 | 202 | 312 | IPR005175 | - | |
| Lcy4g2013 | 420 | MobiDBLite | consensus disorder prediction | 15 | 29 | - | - | |
| Lcy4g2013 | 420 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Lcy4g2013 | 420 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 92 | 325 | IPR039605 | GO:0003680(InterPro) | |
| Lcy4g2013 | 420 | MobiDBLite | consensus disorder prediction | 71 | 168 | - | - | |
| Lcy4g2013 | 420 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 202 | 312 | IPR005175 | - | |
| Lcy4g2013 | 420 | MobiDBLite | consensus disorder prediction | 400 | 420 | - | - | |
| Lcy4g2013 | 420 | Gene3D | - | 202 | 321 | - | - | |
| Lcy4g2013 | 420 | MobiDBLite | consensus disorder prediction | 80 | 99 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g2013 | Lcy-Chr4:46631615 | Lcy9g2354 | Lcy-Chr9:47824431 | 2.18E-46 | dispersed | |
| Lcy4g2010 | Lcy-Chr4:46595440 | Lcy4g2013 | Lcy-Chr4:46631615 | 6.90E-24 | proximal |
Pathway information