Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2024 ATGGCGGATAAAGGCAGAGACGGCGGCCACGCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGCCTTCTAGGGCATGGGACCTTCGCCAAGGTCTACCATGCGCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAGGTGGTTGGGAAGGAGAAGATCATCAAAGTCGGTATGATGGAGCAGATCAAGAGAGAAATCTCTGTTATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCACGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGCTTGTTAGAGGCGGTGAACTGTTCTCTAAAATCGCAAAAGGTCGATTGCGAGAGGATGTGGCCAGGGTTTACTTTCAGCAGTTGATATCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGCGATCTGAAACCGGAGAATCTCCTCCTCGACGAAGACGGTAAACTTAAGGTCACCGATTTCGGCCTCACCGCCTTCTCCGAGCATTTAAAGCAAGACGGATTGCTGCACACAACTTGCGGAACTCCGGCGTACGTCGCGCCAGAGGTCATCGGAAAGCAGGGATACGACGGCGCTAAGGCGGATTTGTGGTCTTGTGGAGTCATCCTCTTCGTTCTTCTGGCCGGATACCTTCCATTTCAGGACGACAACATGGTGGCGATGTACAAGAAGATTTACAGAGGCGACTTTAAGTGTCCGCCGTGGTTCTCTCCCGAAGCCCGCCGCCTCATCACGAAGCTTCTCGATCCGAATCCGGTCACCAGAATCGGAATCGCGAAGATCACATCATCGTCGTGGTTCAAGAAATCGGTACCGAAGACGGTGATTACGAAGGAAGAACAAGAAAAAATCGATGAAAATTTCACGAAATCGAAGCAACCGGCGGAGACGTTAAACGCGTTCCACATAATTTCCCTGTCGGAAGGGTTCGATCTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCATCGCCGGCGAGCAGTGTGATATCGAAGCTCGAGGAAGTTGCGAAGGCGGTGAAGTTCGACGTGAAGAAGAGCGAGTCGTGGGTTCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAGCTGGCGATTGCGGCGGATATCTTCGCCGTGACGCCGTCGTTTGTGATGGTGGAGGTGAAGAAGGACAACGGAGACACTCTGGAATACAACCAATTCTGCAGGAAGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACATCTCCGACTGGGAACTCGACCCCGGCTTGA 1302 52.53 MADKGRDGGHASLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGKLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILFVLLAGYLPFQDDNMVAMYKKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRIGIAKITSSSWFKKSVPKTVITKEEQEKIDENFTKSKQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKAVKFDVKKSESWVRLQGQEKGRKGKLAIAADIFAVTPSFVMVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46752930 46754231 + Maker00003659 Lcy4g2024 631550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2024 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2024 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2024 433 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2024 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2024 433 CDD CIPK_C 304 419 - -
Lcy4g2024 433 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Lcy4g2024 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Lcy4g2024 433 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Lcy4g2024 433 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Lcy4g2024 433 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Lcy4g2024 433 SUPERFAMILY Protein kinase-like (PK-like) 15 287 IPR011009 -
Lcy4g2024 433 Gene3D Kinase associated domain 1, KA1 297 424 - -
Lcy4g2024 433 CDD STKc_SnRK3 17 271 - -
Lcy4g2024 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy4g2024 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Lcy4g2024 433 FunFam Non-specific serine/threonine protein kinase 298 423 - -
Lcy4g2024 433 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0170 Lcy-Chr2:1345199 Lcy4g2024 Lcy-Chr4:46752930 1.40E-268 dispersed
Lcy2g0729 Lcy-Chr2:6426688 Lcy4g2024 Lcy-Chr4:46752930 1.96E-122 dispersed
Lcy4g2024 Lcy-Chr4:46752930 Lcy5g1821 Lcy-Chr5:40981273 1.87E-184 dispersed
Lcy12g0521 Lcy-Chr12:6333534 Lcy4g2024 Lcy-Chr4:46752930 1.33E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65879 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2024 - - - 0.0