Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2025 ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCGCCCGCCGGACACCGACGACTCCCAACTCCACCACCACCAAAACCACCTTCAATCCTCCCATCTCCATACCCCTCCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCTCCATCCCTTCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCCCACTCCGACCTCCCTCTCCAGCCATCGCCGCCGCCGAATCCCGACAATGCCGCCTTTCAGATCGGCGACACCACTCCAGCGGCCAAAATGGCCATGGCCATGCTTCACCAGCAGTTACTCGCCACCGCCGCTGCAGATTCCGGTCTCCTTCCAATGCCTGGTAATGACGTCGTCGAAGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGAAACAGAGCTTCGGAGCTACAGTGTCAGTGAACACTCCACCGCCGGCAGGAGGTTCCGGCGGTGGTGCTGCAGCAGCGGCGCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGCATAGCGGAAAGATTACGAAGAGAGCGGATTGCAGAGAGAATGAAAGCTCTGCAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCTTCGATGCTGGATGAGATCATAGACTACGTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGCATGAGCAGGTTGGGCGGTGCCACTGCTGCCATGCCTTCTCTTCTACCCGATATTTCCTCTCAGGGTGGGACTGACTGTAACCAGTCCAACGGAACCGGCGGGGCCGCCGGAGCTCCGTCGAGTAACGACGCCATGACGATAACGGAGCATCAGGTGGTGAAACTAATGGAGGAGGACATGGGCTCCGCCATGCAATACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCCCTCGCCTCCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCTCTCACGGCGTCCAAGGGCGGAGGAGAATGCCCCACCTCCCCCAGCCTGTCGGCGTTGACCGTTCAGTCAACCGCCTTGGGTAACGGCATCGTTGACAGAGCCGTCAAAGACTCTGCCTCCGTTTCCCGGCCGTGA 1119 59.34 MRLTNSLPDLHSHRRNRPPDTDDSQLHHHQNHLQSSHLHTPPFSSDDFLDQILSSIPSPWELPAGLPNPHSDLPLQPSPPPNPDNAAFQIGDTTPAAKMAMAMLHQQLLATAAADSGLLPMPGNDVVEVEGSSSFKCPNPKQSFGATVSVNTPPPAGGSGGGAAAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGATAAMPSLLPDISSQGGTDCNQSNGTGGAAGAPSSNDAMTITEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLASAISAATCHSRPLTASKGGGECPTSPSLSALTVQSTALGNGIVDRAVKDSASVSRP 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46783341 46788142 - Maker00003517 Lcy4g2025 631551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2025 372 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 317 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy4g2025 372 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983(InterPro)
Lcy4g2025 372 SMART finulus 185 234 IPR011598 GO:0046983(InterPro)
Lcy4g2025 372 FunFam Transcription factor bHLH66 176 241 - -
Lcy4g2025 372 Gene3D - 174 236 IPR036638 GO:0046983(InterPro)
Lcy4g2025 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983(InterPro)
Lcy4g2025 372 MobiDBLite consensus disorder prediction 1 44 - -
Lcy4g2025 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 238 IPR036638 GO:0046983(InterPro)
Lcy4g2025 372 MobiDBLite consensus disorder prediction 70 84 - -
Lcy4g2025 372 MobiDBLite consensus disorder prediction 60 90 - -
Lcy4g2025 372 MobiDBLite consensus disorder prediction 145 185 - -
Lcy4g2025 372 MobiDBLite consensus disorder prediction 256 280 - -
Lcy4g2025 372 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2208 Lcy-Chr12:43299472 Lcy4g2025 Lcy-Chr4:46783341 7.67E-19 dispersed
Lcy2g1721 Lcy-Chr2:26722667 Lcy4g2025 Lcy-Chr4:46783341 4.01E-45 dispersed
Lcy3g1560 Lcy-Chr3:42640201 Lcy4g2025 Lcy-Chr4:46783341 4.33E-53 dispersed
Lcy4g2025 Lcy-Chr4:46783341 Lcy9g2004 Lcy-Chr9:44925824 2.26E-17 dispersed
Lcy4g2025 Lcy-Chr4:46783341 Lcy2g0166 Lcy-Chr2:1300427 3.28E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20012 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2025 - - - 0.0