Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2026 ATGGCGGGTAATGGGGTTTTTGCAGAGATTCTCGAAGGTGAAGTCTACAAATACTATTCCGAAGGAGAGTGGAAGAAATCCTCCTCGGGGAAGAGCGTCGCCATTATCAACCCCACTACCAGGAAGACTCAATACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCTAAAACTGCTCAGAAATCGTGGGCAAAGACTCCATTGTGGAAGAGAGCTGAGCTTCTTCACAAGGCAGCTGCAATTTTGAAAGAACACAAGGCTCCAATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCTAAAGATGCTGTCACTGAGGTTGTGAGGTCTGGGGATCTTGTCTCATATTGTGCTGAAGAAGGTGTCAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTCTCAAAACTCGCCCCGGCTTTGATTGCTGGAAATTCTATCGTCCTCAAGCCTCCAACTCAGGGCGCTGTTTCTGCTCTCCACATGGTTCATTGCTTCCATCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGAAAAGGTTCTGAGATCGGTGATTTCCTCACAATGCATCCGGGTGTAGACTGTATAAGCTTTACTGGTGGAGATACCGGTATTGCAATTTCAAAGAAGGCAGGCATGATTCCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTCGATTTAGTCGCTGCAAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGCACTGCCGTCAAGGTTGTTTTGGTAATCGAGTCTGTAGCAGATGCTTTGGTCGAGAAAGTAAATGACCGCGTGGCTAAATTAACTGTCGGTGCCCCTGAAGACGACTCAGACATTACTCCGGTCGTGACAGAGTCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATATGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTCATAAGAATCAGTTCTATTGAAGAAGGAATCCATCATTGCAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAGACCGGGACAGTTCAAATCAACTCTGCACCCGCTCGAGGACCCGACCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGAGTAACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTGATCAACTTGCCAACACCTTCCTACACCATGGGTTAG 1491 46.28 MAGNGVFAEILEGEVYKYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKLAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVIESVADALVEKVNDRVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46794618 46798299 - Maker00003390 Lcy4g2026 631552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2026 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 280 - -
Lcy4g2026 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Lcy4g2026 496 SUPERFAMILY ALDH-like 14 487 IPR016161 GO:0016491(InterPro)
Lcy4g2026 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Lcy4g2026 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Lcy4g2026 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
Lcy4g2026 496 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Lcy4g2026 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Lcy4g2026 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Lcy4g2026 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2026 Lcy-Chr4:46794618 Lcy12g0802 Lcy-Chr12:10447106 1.64E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2026 K00131 - csv:101208699 951.814