Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2026 ATGGCGGGTAATGGGGTTTTTGCAGAGATTCTCGAAGGTGAAGTCTACAAATACTATTCCGAAGGAGAGTGGAAGAAATCCTCCTCGGGGAAGAGCGTCGCCATTATCAACCCCACTACCAGGAAGACTCAATACAGAGTTCAAGCTTGTAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCTAAAACTGCTCAGAAATCGTGGGCAAAGACTCCATTGTGGAAGAGAGCTGAGCTTCTTCACAAGGCAGCTGCAATTTTGAAAGAACACAAGGCTCCAATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCTAAAGATGCTGTCACTGAGGTTGTGAGGTCTGGGGATCTTGTCTCATATTGTGCTGAAGAAGGTGTCAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTCTCAAAACTCGCCCCGGCTTTGATTGCTGGAAATTCTATCGTCCTCAAGCCTCCAACTCAGGGCGCTGTTTCTGCTCTCCACATGGTTCATTGCTTCCATCTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACTGGAAAAGGTTCTGAGATCGGTGATTTCCTCACAATGCATCCGGGTGTAGACTGTATAAGCTTTACTGGTGGAGATACCGGTATTGCAATTTCAAAGAAGGCAGGCATGATTCCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTCGATTTAGTCGCTGCAAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGCACTGCCGTCAAGGTTGTTTTGGTAATCGAGTCTGTAGCAGATGCTTTGGTCGAGAAAGTAAATGACCGCGTGGCTAAATTAACTGTCGGTGCCCCTGAAGACGACTCAGACATTACTCCGGTCGTGACAGAGTCGTCGGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATATGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTCATAAGAATCAGTTCTATTGAAGAAGGAATCCATCATTGCAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGACATCAACAAGGCGATATTGATAAGCGACGCAATGGAGACCGGGACAGTTCAAATCAACTCTGCACCCGCTCGAGGACCCGACCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGAGTAACCAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTGATCAACTTGCCAACACCTTCCTACACCATGGGTTAG 1491 46.28 MAGNGVFAEILEGEVYKYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKLAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVIESVADALVEKVNDRVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46794618 46798299 - Maker00003390 Lcy4g2026 631552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2026 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 280 - -
Lcy4g2026 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Lcy4g2026 496 SUPERFAMILY ALDH-like 14 487 IPR016161 GO:0016491(InterPro)
Lcy4g2026 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Lcy4g2026 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Lcy4g2026 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
Lcy4g2026 496 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Lcy4g2026 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Lcy4g2026 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Lcy4g2026 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2026 K00131 - - csv:101208699 951.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2026 Lcy-Chr4:46794618 Lcy12g0802 Lcy-Chr12:10447106 1.64E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40