Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2037 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGGCAAACTTCTGGGGGTAATAATACCAAGCCATGGCCTATGCATTGTGAATTTTTGGAGAACCAGATGGGGAATCCTGATAAGGAGCCTGCTCTTAGTGGAACTAGCGACCGAACCACCCGTTCTGGGAATTCTTTTCCTCTTGAAAGCATTTCTGAGGACGCTGCAGTTATAGACAGGAAAGAAAACCCATCTACTTTTGTTCCTGCACTTAGATCAGGGGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGATATGGCTAAGAAGTTTGGCTGTAGTTTTCTCAATGAGGAAGCTGTCTCCTTCTATGGTCTAGGAATTGAGTATGGGAGTTGGTTGAGAATGCGCGTGAATAATCTAAATATGGAGGAATTTGGAATCTATTCCAGATTTGTCTTAGAGAGAGATACTTTAAACAAGGCTCTTGATCCTGTAATTGGAGTTAATCAAGCTCGCAGGTCCTTACTTGTAGCAAACGCCGGTGATTGTCGAGCGGTACTGTCAAGACAAGGATGTGCAATAGAAATGTCTAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGCGGATTCGTTGATGATGATTATCTAAACGGCCTGCTTGCGGTTACACGCGCTCTAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGCGAAAGAGGTGGACCGTTAAGTGCCGAACCTGAACTTAGATTAATGACATTGACGAAGGAGGACGAGTTCTTGATCATCGGCAGTGATGGAATATGGGACGTCTTCACAAGTCAAAACGCTGTCGATTTTGCTCGGAGGAGGCTGCAAGAGCACAATGATGTGAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTGTTGGTTAGCTTTCACTCGGAGCCACCTCCACCTGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATTTCAGCAGAGGGGCTTCAAAACCTCAAATTTCTGCTAGAAGGATAG 1083 44.88 MCVTDAEQVGTERQTSGGNNTKPWPMHCEFLENQMGNPDKEPALSGTSDRTTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGLGIEYGSWLRMRVNNLNMEEFGIYSRFVLERDTLNKALDPVIGVNQARRSLLVANAGDCRAVLSRQGCAIEMSKDHRPCCTKERKRIEALGGFVDDDYLNGLLAVTRALGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKVCCKEIVEEAIKRGATDNLTVVLVSFHSEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46923958 46929293 + Maker00003666 Lcy4g2037 631563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2037 360 Pfam Protein phosphatase 2C 173 319 IPR001932 -
Lcy4g2037 360 SUPERFAMILY PP2C-like 74 329 IPR036457 -
Lcy4g2037 360 CDD PP2Cc 84 327 IPR001932 -
Lcy4g2037 360 MobiDBLite consensus disorder prediction 1 59 - -
Lcy4g2037 360 Gene3D - 144 334 IPR036457 -
Lcy4g2037 360 ProSiteProfiles PPM-type phosphatase domain profile. 84 327 IPR001932 -
Lcy4g2037 360 MobiDBLite consensus disorder prediction 8 22 - -
Lcy4g2037 360 PANTHER PROTEIN PHOSPHATASE 2C 82 327 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy4g2037 360 MobiDBLite consensus disorder prediction 40 59 - -
Lcy4g2037 360 SMART PP2C_4 74 325 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2037 Lcy-Chr4:46923958 Lcy9g2338 Lcy-Chr9:47748218 4.04E-70 dispersed
Lcy4g2037 Lcy-Chr4:46923958 Lcy12g0891 Lcy-Chr12:12724307 6.96E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20014 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2037 K14803 - csv:101210349 573.163