Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2051 ATGTCGGGCTGGGATGAAGGAGGAATCTACTACAGCGACCAAGCGCAGTCCCTCGGTGACGGAACCGGCATCGGCCGCAGCGGAGATGCCGACGAGAAGGCCACTCATCACTCGGTCCTTCGAAAATTCAAGGAGTTCATCCGTGGATTTGAAGTCGACAAGAATGTTTTCCCTTACAGAGAGAGCCTTCTCCACAATCCGAAGTATCTTCGCGTTGATATGGAGGATGTTCACGCTTTTGACTCCGATCTCCCGTCAAAGCTTCGATCTGCTCCTGCCGATTTCTTGCCCTTGTTTGAGACTGCTGCGGCGGAGGTTTTAATGAATCTGAAGACGAAGGTGGCCGGTGAGACGGGAGAAATGGTGGAGCCCGTGCCTGGGGATGTTCAAATTCTGCTAACGTCGAAGGAGGATCCAGTCTCGATGCGGTCACTTGGGGCTCAATACATTTCAAAACTTATTAAAATATCTGGAATCACAATCGCTGCGTCAAGGACCAAGGCAAAGGCAACATATGTGACCTTAATGTGCAAAAACTGTAGAAGTACACAAAGAGTTCCTTGTCGGCCTGGACTTGGAGGGGCAATTGTCCCTCGATCATGTAATCATATACCTCAGGCCGGAGAAGAACCTTGCCCACTGGATCCTTGGATTGTGGTTCCTGATAAGAGCATGTATGTTGATCAACAGACTTTAAAACTGCAGGAAAACCCAGAAGATGTACCTACTGGGGAACTTCCTAGGAACATGCTTCTATCAGTAGATCGCCATCTTGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGGATATACAGTATTTATCAAGCTGCCAATTCTTCCGCATCTCACAAAGGAGCAGTTGCAATCAGACAGCCTTATATCAGGGTAGTAGGAATTGAAGAATCTAATGAAGCTAACTCTCGGGGCCCTGCATCTTTCACAGCAGAAGATATAGAAGAGTTCAAAAAATTTGCAGCAGAGCCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGCCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTAAGAGGTGACATTAATGTATTACTCTTGGGGGACCCGTCTACAGCTAAATCACAGTTTCTTAAGTTTGTTGAGAAGACAGCTCCAGTTGCTGTCTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCTTCAGTGATACGAGATAGCAGCTCTCGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGTGGTGTTGTCTGCATTGACGAGTTTGACAAAATGAGATCAGAGGATAGAGTTGCAATTCATGAAGCCATGGAACAACAGACAATATCAATTGCCAAAGCAGGGATAACAACGGTTCTTAATTCCAGAACCTCAGTGCTTGCGGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAAGACGGCACAGGATAACATTGATTTGCAGACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCACATAATAAAAGTTCATGCATCTGCTGATGCAACCTTGGGTGAAAGTAGAGCTTCTAAAGAAGAGAATTGGCTAAAGAGGTATCTTCAGTATTGTCGAACTCAATGTCATCCCCGTTTGTCAGAATCTGCATCCACAATGTTGCAGAATAATTATGTTAAAATCAGACAGGACATGAGACAACAAGCAAACGAAACAGGGGAGGCTGCTGCTATTCCGATTACCGTGAGGCAGCTGGAAGCTATTGTAAGGTTAAGCGAGGCACTCGCAAAAATGAAGTTGTCCCATGTTGCCACTGAGGAAAATGTGCAGGAAGCCATTAGACTTTTTACTGTGTCCACGATGGACGCAGCACGCTCAGGGATTCATCAGCAAGTAAATCTGACTCCTGAAATGGCTAATGAAATAAAGCAAGCAGAAACACAGATAAAGAGAAGAATAGGAATTGGCAACCACATATCTGAGAGAAGGCTGATTGACGAGCTCACTAAAATGGGGATGAACGAGTCAACTGTGAGAAGAGCTCTGATCATTATGCACCAGAGAGATGAAGTTGAATATAAAAGAGAAAGGCGCGTCATTTTCCGCAAGGCGTGA 2208 44.66 MSGWDEGGIYYSDQAQSLGDGTGIGRSGDADEKATHHSVLRKFKEFIRGFEVDKNVFPYRESLLHNPKYLRVDMEDVHAFDSDLPSKLRSAPADFLPLFETAAAEVLMNLKTKVAGETGEMVEPVPGDVQILLTSKEDPVSMRSLGAQYISKLIKISGITIAASRTKAKATYVTLMCKNCRSTQRVPCRPGLGGAIVPRSCNHIPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIYQAANSSASHKGAVAIRQPYIRVVGIEESNEANSRGPASFTAEDIEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASADATLGESRASKEENWLKRYLQYCRTQCHPRLSESASTMLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELTKMGMNESTVRRALIIMHQRDEVEYKRERRVIFRKA 735
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 47083917 47089983 + Maker00003736 Lcy4g2051 631577
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2051 735 Pfam MCM AAA-lid domain 561 650 IPR041562 -
Lcy4g2051 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 651 IPR027417 -
Lcy4g2051 735 Gene3D - 169 227 - -
Lcy4g2051 735 SMART mcm 138 652 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 FunFam DNA helicase 34 122 - -
Lcy4g2051 735 CDD MCM5 337 650 - -
Lcy4g2051 735 FunFam DNA helicase 169 227 - -
Lcy4g2051 735 Gene3D - 142 277 IPR012340 -
Lcy4g2051 735 ProSiteProfiles MCM family domain profile. 333 539 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 Pfam MCM P-loop domain 320 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 Gene3D - 31 122 - -
Lcy4g2051 735 FunFam DNA helicase 314 665 - -
Lcy4g2051 735 ProSitePatterns MCM family signature. 442 450 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 293 305 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 143 158 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 169 181 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 569 584 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 645 662 IPR008048 GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lcy4g2051 735 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 724 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Lcy4g2051 735 Gene3D - 314 670 IPR027417 -
Lcy4g2051 735 Pfam MCM5, C-terminal domain 675 733 IPR054125 -
Lcy4g2051 735 SUPERFAMILY Nucleic acid-binding proteins 42 299 IPR012340 -
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 486 498 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 448 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 374 389 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 462 475 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 513 521 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy4g2051 735 Pfam MCM OB domain 142 277 IPR033762 -
Lcy4g2051 735 Pfam MCM N-terminal domain 41 117 IPR027925 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1810 Lcy-Chr3:45311503 Lcy4g2051 Lcy-Chr4:47083917 3.10E-90 dispersed
Lcy4g0231 Lcy-Chr4:2853900 Lcy4g2051 Lcy-Chr4:47083917 7.92E-26 dispersed
Lcy4g2051 Lcy-Chr4:47083917 Lcy5g0260 Lcy-Chr5:2459963 1.56E-78 dispersed
Lcy4g2051 Lcy-Chr4:47083917 Lcy11g0915 Lcy-Chr11:27405421 2.14E-100 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2051 K02209 - csv:101211822 1398.26