Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2052 ATGTTGGTCAAGAACAAGAGATTGGAGAAACCTATTATCCAAATTCTGTACACAAAAACACAAATCCCCAACCTCTCTCTCTCCATCTCCATGGTACCAAAATCCACCACTCTCTTTTTCTTCACTCTCTTAATCTCACAGCTCCACAGTTCCAAATCACAGCCATGGATCAAAGCTGGCTACTGGCTTTCCGCCCTTGATTCCCCTTCATCCGACATAAACTCAGCTCTTTTCACTCATCTTTTTTGTGGGTTTGCAGAGCTCATAAATCCCACTTCCTACCAGCTTCATCTCTCCCCTTCAGATCTCGAAAACTTCTCCAATTTCACCACAATCGTCAAACAAAAGAACCCATCTCTCTCCACTCTCCTCTCCATAGCAGGTGGAAATGCAAATTACTCAACCATTTCCTCAATGGTCAGCAATTCCACTCACAGAAAAGCCTTCATCGATTCCACCATCAAAATCGCAAGGACCCACGAGTTTGATGGGCTGGATTTCTGCTGGGTTTCAGCCAAAACCACTTCCGACATGTCCAACATGGGAAAGCTCTTCCAAGAGTGGCGACAGGCAGCAGAAATGGAGGCCAAGAGCTCAAGAAAGCAAGTGCTTATTCTGACAGCAGCTGTCCACTACACTCCAGATTTGGAATTTGGGTCGTTTCCTGTGGATTCCATAAGGGATTATTTGAATTGGGCAAACGTTTTGGCTTATGATTATTACATGCCAAATTGGGCAAACTTTACAGCTCCTTCTGCAGCTTTGTATGACCCTTTGGGGAAATTAGCAAATACAGACACTGGAATTGGTGAGTGGATTGAAAGGGGACTGCCAGCTGCTAATATTGTGTTGGCCTTGCCCTTTTATGGCTATGCTTGGACACTCAAGAACATTGAGGATTTTGGTGTTGGGGCTGCAGCTGTTGGGCCAGCCATTTCTGATGATGGGTCAGTTAGCTATAAGGATATAAAGGATTATATGAAGAGAAATGGGGTTGGGGATGATCATGTGGAGTTTAATGGTAGCTATGTGATGAGTTACTGTGTGGTTGGATCTACTTGGATTGGTTTTGATGATGCTGAGGTTGTGAAAATTAAGGTTGCTTATGTCAAGCAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTTACGACGATAATTGGGAGCTCTCTTCTATCGCAGGAAGAATATCAAAATTCAATGTAAACAATGTAGTTGGTGGAGAAGACTTTAAGAGGAATGCAGCTGATTTGCAAGTTTTTAGCTTTGCTGAGATTGAAAAGGCTACCAATAAGTTTGCTTTTGTGAATAAGCTTGGACAAGGTGGCTATGGTCCTGTTTACAAGGGTATACTACCAAATGGACAGGGGATAGCAGTGAAGAGACTGTCAGAAACTTCAGCACAGGGTTTTGAGGAGTTTAAGAATGAGGTTTTGCTCACTGCAAGACTACAGCATGTCAACCTTGTACAAGTTGTTGGATTTTGTGTTGACACTCAGGAACATATGTTGATTTATGAGTACATGCCAAACAAAAGCTTGGACTTCCACCTCTTCGAAGGCCATGGAAGAGGAAATCTGTTAAATTGGTCAAAAAGAGTGGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTGCAAGAATACTCAAGATTGACAATAATTCATAGGGACTTGAAGCCTAGCAATATTTTGTTGGATGATGGCATGAAGCCGAAAATCTCAGATTTTGGCATGGCTAGAATCTTTGCGAAGGATGAACTTGAAGCAAACACGAGCCGGATTGCAGGAACACATGGCTATGTTCCTCCCGAATATATGAGTAAAGGACTTTATTCCACGAAATCAGATGTATTTAGTTTTGGAGTTCTTCTTCTCCAAATCATAAGTGGCAAGAGGACTACTAAGTTGTATGGGGTGCATGAACATTTGAATCTTCTAAATTATGCATATGAGCTGTGGAAAGAGGGGAGAGGAATGGAGTTTATGGATCCATCACTGGATGATTCTGATTCAACTTGCAAACTAACAAGATGCATGCAGATAGCTTTGCTTTGTGTCCAAGAAAATGCAGATGATAGGCCAACCATGTTGGAAATCTCTTCAATGCTTAAAAGTGCAACTTCAGAGCTTAAAGCTCCACAAAAGCCTGCTTTCTCCATAAAACAAATTCAAGATGAAACTGATCCTAGCCTTGAGATTGAACGACAAACTTACTCGGTTTGTAGTGCAACTGTTACGGAAGTTGTAGCTCGATAA 2265 42.08 MLVKNKRLEKPIIQILYTKTQIPNLSLSISMVPKSTTLFFFTLLISQLHSSKSQPWIKAGYWLSALDSPSSDINSALFTHLFCGFAELINPTSYQLHLSPSDLENFSNFTTIVKQKNPSLSTLLSIAGGNANYSTISSMVSNSTHRKAFIDSTIKIARTHEFDGLDFCWVSAKTTSDMSNMGKLFQEWRQAAEMEAKSSRKQVLILTAAVHYTPDLEFGSFPVDSIRDYLNWANVLAYDYYMPNWANFTAPSAALYDPLGKLANTDTGIGEWIERGLPAANIVLALPFYGYAWTLKNIEDFGVGAAAVGPAISDDGSVSYKDIKDYMKRNGVGDDHVEFNGSYVMSYCVVGSTWIGFDDAEVVKIKVAYVKQRRLLGYFVWLVSYDDNWELSSIAGRISKFNVNNVVGGEDFKRNAADLQVFSFAEIEKATNKFAFVNKLGQGGYGPVYKGILPNGQGIAVKRLSETSAQGFEEFKNEVLLTARLQHVNLVQVVGFCVDTQEHMLIYEYMPNKSLDFHLFEGHGRGNLLNWSKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKDELEANTSRIAGTHGYVPPEYMSKGLYSTKSDVFSFGVLLLQIISGKRTTKLYGVHEHLNLLNYAYELWKEGRGMEFMDPSLDDSDSTCKLTRCMQIALLCVQENADDRPTMLEISSMLKSATSELKAPQKPAFSIKQIQDETDPSLEIERQTYSVCSATVTEVVAR 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47092872 47103361 - Maker00003444 Lcy4g2052 631578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2052 754 CDD STKc_IRAK 440 707 - -
Lcy4g2052 754 SMART 2g34 56 386 IPR011583 GO:0008061(InterPro)
Lcy4g2052 754 SUPERFAMILY (Trans)glycosidases 60 390 IPR017853 -
Lcy4g2052 754 SUPERFAMILY Protein kinase-like (PK-like) 416 706 IPR011009 -
Lcy4g2052 754 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 374 721 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy4g2052 754 FunFam Uncharacterized protein 510 715 - -
Lcy4g2052 754 Gene3D Phosphorylase Kinase; domain 1 394 509 - -
Lcy4g2052 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2052 754 Pfam Protein tyrosine and serine/threonine kinase 436 705 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2052 754 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 56 402 IPR001223 GO:0005975(InterPro)
Lcy4g2052 754 ProSiteProfiles Protein kinase domain profile. 434 721 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2052 754 CDD GH18_plant_chitinase_class_V 54 392 - -
Lcy4g2052 754 Gene3D - 288 357 IPR029070 -
Lcy4g2052 754 Gene3D Transferase(Phosphotransferase) domain 1 510 729 - -
Lcy4g2052 754 FunFam Class V chitinase CHIT5b 288 357 - -
Lcy4g2052 754 FunFam Uncharacterized protein 410 509 - -
Lcy4g2052 754 Gene3D Glycosidases 71 388 - -
Lcy4g2052 754 Pfam Glycosyl hydrolases family 18 59 386 IPR001223 GO:0005975(InterPro)
Lcy4g2052 754 SMART serkin_6 434 710 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2052 754 SUPERFAMILY Chitinase insertion domain 289 357 IPR029070 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2052 Lcy-Chr4:47092872 Lcy5g1960 Lcy-Chr5:42450104 2.11E-105 dispersed
Lcy4g2052 Lcy-Chr4:47092872 Lcy5g1958 Lcy-Chr5:42435742 1.20E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65881 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2052 - - - 0.0