Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2058 ATGATTGTGGAGGATCGAAGGGCTAATTTTTTGGGTGAAAATGGGGATATGGACCAGTTCCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCCATTTGCCTCAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACTTACCTGTTATCATGTTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTACTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAACTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGTCCTCTGCTAAGAACCAAAATAAGTGGACTAATGGAAATGACACTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCATTGCTGATAACGGAAAACCTGGTAAAAGGCGGAAAGACCAAGACGACGATGAGGAAGGAGGTGAAGAAGAGAGTACTTATGAGAATGACGACTCCACCAACCAAAAAAAGCGAAGGGTAGTTTGGACAGGAGAGTTGCACAGGAAGTTTATTGCAGCTGTTAACCATTTGGGCTATGAAAAGGCTGTTCCTAAAAAGATCCTTGATCTGATGAATGATGAAGACCTTACAAGAGAAAATGTGGCTAGTCATCTTCAGGCATTGATCTTTTCCTTCTTTTCTTTTAAATACAGACAATACCTTAAAAAAATGTGTACTAAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGGTAAAGACTCCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATAACTGGAACAGGAAGGCTTTCGAACGCTGCATTTTCGTCGTATCCCTCTCGAGAAATTGTTGATAGATTAAATTCTACTGCTGGATTGAGCTTACATGGAATTGCTTCCTCTGGAATGATCCAACAGGGTACTTCCCATAACTTGAGTAGCTCATTAAATGTACTTAGGAAACCCCATCCAGATCTCTTGCTTGCAAGCCAACCTCCGAGCATATTCAACGGTATTTCAACGTCATCAAATCACATCCAGTTGCATCGGGACAAACACACTATGCCATTTAAAGGGTCTAATTTGATAAATGATGCCTCGAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAGTGGCTGTTGGTAGCTCGAGCAATTATGACTTCAGTGTTTCGAGCCATCAGTTGATGTTACAAGGACATAAACAACAGATTCATGGCAGTGGAGAATTTGGAGACCAATCTTCTCTTAAGGTATCTTTAAACAACCCAGAAGACAGAGGCGCAGGCGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAAAACTGGCAGGGTTCAATCCAGCTACCTAAGTTTTCATCTAATGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCTATTAATTTGACAATTTCTTCGGCTCAGTCCGATAATGACAACTTTCCTGTTGGTTTCCCTTCAACAAGTGTGGATTCGAGTTCTCAGCTTGATTTGAAAGGGGAGACACAATGCTACGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAAATCAAAACAACAATGGGAAGCAGCGAAACCGGATTACTATGGGAACCATAGTTCCATTGTGAGAAACTCTCTAGTTTCTGGGAATAATGTTGCAGATCCCTTGAACCAGAGTGCAGATCAGAATAATGCAGTTTGTCTCGAAAACATCGGCAGCTCTTTGACCAACCAATTGAACAATGGTGCTCCAACCTTCATTCAGCACGGTGCGGAAATATCGACGACAGACACTTGGATGAACTACGACGGGAAGGTTCTCATGGATCCGACAAAGCTACAGAATGGATTCGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGATGAAACAGGATCAAGATCAATCTATTCAAATAAATGACGAATTTGGATTTGATGCTCAATCTCTCGGGTCGTCGTGTATATGA 2121 42.01 MIVEDRRANFLGENGDMDQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVTHGACDYLLKPVRIEELKNIWQHVLRRKKSSAKNQNKWTNGNDTCQTVEVAKGFPSAVIADNGKPGKRRKDQDDDEEGGEEESTYENDDSTNQKKRRVVWTGELHRKFIAAVNHLGYEKAVPKKILDLMNDEDLTRENVASHLQALIFSFFSFKYRQYLKKMCTKEAQQCNMMAAFGGKDSSFRPMASLNGFSITGTGRLSNAAFSSYPSREIVDRLNSTAGLSLHGIASSGMIQQGTSHNLSSSLNVLRKPHPDLLLASQPPSIFNGISTSSNHIQLHRDKHTMPFKGSNLINDASSFTVSTSFPDARVAVGSSSNYDFSVSSHQLMLQGHKQQIHGSGEFGDQSSLKVSLNNPEDRGAGVSNILGHGQSNKNWQGSIQLPKFSSNVSLTGIYPPDGMPAINLTISSAQSDNDNFPVGFPSTSVDSSSQLDLKGETQCYEELIGSVVEAMNGKSKQQWEAAKPDYYGNHSSIVRNSLVSGNNVADPLNQSADQNNAVCLENIGSSLTNQLNNGAPTFIQHGAEISTTDTWMNYDGKVLMDPTKLQNGFANSSFNSLDELVNALMKQDQDQSIQINDEFGFDAQSLGSSCI 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47161794 47166170 + Maker00003360 Lcy4g2058 631584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2058 706 FunFam Two-component response regulator 206 278 - -
Lcy4g2058 706 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lcy4g2058 706 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lcy4g2058 706 CDD REC_typeB_ARR-like 26 140 - -
Lcy4g2058 706 MobiDBLite consensus disorder prediction 173 207 - -
Lcy4g2058 706 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lcy4g2058 706 Gene3D - 206 278 - -
Lcy4g2058 706 Pfam Myb-like DNA-binding domain 212 259 IPR001005 -
Lcy4g2058 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 290 IPR045279 GO:0009736(InterPro)
Lcy4g2058 706 PIRSF RR_ARR_type-B 5 706 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy4g2058 706 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 260 IPR006447 GO:0003677(InterPro)
Lcy4g2058 706 SUPERFAMILY Homeodomain-like 208 260 IPR009057 -
Lcy4g2058 706 SUPERFAMILY CheY-like 23 150 IPR011006 -
Lcy4g2058 706 Gene3D - 24 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2058 K14491 - - csv:101203718 1071.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1464 Lcy-Chr10:38572497 Lcy4g2058 Lcy-Chr4:47161794 1.29E-17 dispersed
Lcy2g0162 Lcy-Chr2:1259169 Lcy4g2058 Lcy-Chr4:47161794 5.11E-178 dispersed
Lcy2g0283 Lcy-Chr2:2258681 Lcy4g2058 Lcy-Chr4:47161794 9.33E-32 dispersed
Lcy2g0559 Lcy-Chr2:4789191 Lcy4g2058 Lcy-Chr4:47161794 3.66E-17 dispersed
Lcy4g2058 Lcy-Chr4:47161794 Lcy6g0193 Lcy-Chr6:1759863 2.18E-37 dispersed
Lcy4g2058 Lcy-Chr4:47161794 Lcy9g1879 Lcy-Chr9:43815993 2.04E-112 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 1 198 Response Regulator Gene Family AT1G59940 60.5 4.7e-54 209.1
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G59940 57.9 2.9e-40 163.3
Lcy1g1833 . 11 154 Response Regulator Gene Family AT1G59940 56.3 5.5e-39 159.1
Lcy7g0695 . 9 176 Response Regulator Gene Family AT1G59940 53.0 4.0e-37 152.9
Lcy10g1232 . 2 161 Response Regulator Gene Family AT1G59940 54.0 6.8e-37 152.1
Lcy7g0216 . 16 182 Response Regulator Gene Family AT1G10470 65.3 6.3e-51 198.4
Lcy5g0961 . 61 203 Response Regulator Gene Family AT1G10470 58.7 6.5e-40 161.8
Lcy1g1833 . 17 154 Response Regulator Gene Family AT1G10470 60.9 5.5e-39 158.7
Lcy10g1232 . 18 178 Response Regulator Gene Family AT1G10470 51.2 1.5e-36 150.6
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 11 172 Response Regulator Gene Family AT5G62920 62.4 9.3e-47 184.1
Lcy1g1833 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.2e-40 162.9
Lcy5g0961 . 46 205 Response Regulator Gene Family AT5G62920 52.5 1.1e-39 160.6
Lcy7g0216 . 28 182 Response Regulator Gene Family AT1G19050 59.1 4.5e-42 168.7
Lcy1g1833 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.0e-39 158.3
Lcy5g0961 . 59 205 Response Regulator Gene Family AT1G19050 53.7 3.9e-38 155.6
Lcy1g1833 . 8 268 Response Regulator Gene Family AT2G41310 52.2 8.8e-60 227.6
Lcy5g0961 . 52 207 Response Regulator Gene Family AT2G41310 75.0 9.8e-59 224.2
Lcy10g1232 . 10 160 Response Regulator Gene Family AT2G41310 59.5 1.1e-41 167.5
Lcy7g0216 . 25 155 Response Regulator Gene Family AT2G41310 57.4 1.9e-38 156.8
Lcy9g1560 . 15 163 Response Regulator Gene Family AT2G41310 51.3 1.2e-37 154.1
Lcy1g1833 . 8 268 Response Regulator Gene Family AT3G57040 53.2 1.2e-62 237.3
Lcy5g0961 . 52 209 Response Regulator Gene Family AT3G57040 78.5 4.9e-61 231.9
Lcy7g0695 . 4 168 Response Regulator Gene Family AT3G57040 61.7 4.0e-47 185.7
Lcy10g1232 . 14 190 Response Regulator Gene Family AT3G57040 54.4 4.1e-44 175.6
Lcy7g0216 . 25 155 Response Regulator Gene Family AT3G57040 58.0 2.1e-40 163.3
Lcy9g1560 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.6e-40 162.5
Lcy7g0216 . 25 184 Response Regulator Gene Family AT1G74890 60.6 1.6e-44 176.8
Lcy1g1833 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.6e-39 160.2
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G74890 55.2 1.0e-38 157.5
Lcy2g0621 . 26 169 Response Regulator Gene Family AT1G74890 58.5 1.1e-37 154.1
Lcy5g0961 . 57 205 Response Regulator Gene Family AT2G40670 55.3 9.8e-40 160.6
Lcy7g0216 . 26 156 Response Regulator Gene Family AT2G40670 54.7 3.5e-37 152.1
Lcy1g1833 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 151.0
Lcy5g0961 . 57 205 Response Regulator Gene Family AT3G56380 54.7 2.0e-39 159.5
Lcy7g0216 . 26 156 Response Regulator Gene Family AT3G56380 54.1 6.5e-38 154.5
Lcy1g1833 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.2e-37 152.1
Lcy10g1232 . 10 157 Response Regulator Gene Family AT3G56380 54.0 9.4e-37 150.6
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy3g0037 . 154 291 Response Regulator Gene Family AT5G60100 61.6 2.9e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005633 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 15 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20015 None None None None Lcy TR