Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2058 ATGATTGTGGAGGATCGAAGGGCTAATTTTTTGGGTGAAAATGGGGATATGGACCAGTTCCCTATTGGTATGCGTGTTCTTGCTGTGGATGATGACCCCATTTGCCTCAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAGAAACAAGTTTGATCTGGTTATCAGCGACGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACTTACCTGTTATCATGTTGTCTGCGCATAGCGATACCGAACTTGTAAAGAAGGGAGTTACTCACGGTGCTTGTGACTATTTGCTGAAACCTGTTCGAATTGAGGAACTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGTCCTCTGCTAAGAACCAAAATAAGTGGACTAATGGAAATGACACTTGTCAAACTGTTGAAGTTGCAAAAGGTTTCCCATCTGCAGTCATTGCTGATAACGGAAAACCTGGTAAAAGGCGGAAAGACCAAGACGACGATGAGGAAGGAGGTGAAGAAGAGAGTACTTATGAGAATGACGACTCCACCAACCAAAAAAAGCGAAGGGTAGTTTGGACAGGAGAGTTGCACAGGAAGTTTATTGCAGCTGTTAACCATTTGGGCTATGAAAAGGCTGTTCCTAAAAAGATCCTTGATCTGATGAATGATGAAGACCTTACAAGAGAAAATGTGGCTAGTCATCTTCAGGCATTGATCTTTTCCTTCTTTTCTTTTAAATACAGACAATACCTTAAAAAAATGTGTACTAAGGAAGCTCAGCAATGTAACATGATGGCTGCATTTGGAGGTAAAGACTCCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATAACTGGAACAGGAAGGCTTTCGAACGCTGCATTTTCGTCGTATCCCTCTCGAGAAATTGTTGATAGATTAAATTCTACTGCTGGATTGAGCTTACATGGAATTGCTTCCTCTGGAATGATCCAACAGGGTACTTCCCATAACTTGAGTAGCTCATTAAATGTACTTAGGAAACCCCATCCAGATCTCTTGCTTGCAAGCCAACCTCCGAGCATATTCAACGGTATTTCAACGTCATCAAATCACATCCAGTTGCATCGGGACAAACACACTATGCCATTTAAAGGGTCTAATTTGATAAATGATGCCTCGAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAGTGGCTGTTGGTAGCTCGAGCAATTATGACTTCAGTGTTTCGAGCCATCAGTTGATGTTACAAGGACATAAACAACAGATTCATGGCAGTGGAGAATTTGGAGACCAATCTTCTCTTAAGGTATCTTTAAACAACCCAGAAGACAGAGGCGCAGGCGTTTCTAATATTTTGGGCCATGGTCAGTCTAACAAAAACTGGCAGGGTTCAATCCAGCTACCTAAGTTTTCATCTAATGTCTCACTCACTGGAATTTACCCTCCTGATGGAATGCCTGCTATTAATTTGACAATTTCTTCGGCTCAGTCCGATAATGACAACTTTCCTGTTGGTTTCCCTTCAACAAGTGTGGATTCGAGTTCTCAGCTTGATTTGAAAGGGGAGACACAATGCTACGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAAATCAAAACAACAATGGGAAGCAGCGAAACCGGATTACTATGGGAACCATAGTTCCATTGTGAGAAACTCTCTAGTTTCTGGGAATAATGTTGCAGATCCCTTGAACCAGAGTGCAGATCAGAATAATGCAGTTTGTCTCGAAAACATCGGCAGCTCTTTGACCAACCAATTGAACAATGGTGCTCCAACCTTCATTCAGCACGGTGCGGAAATATCGACGACAGACACTTGGATGAACTACGACGGGAAGGTTCTCATGGATCCGACAAAGCTACAGAATGGATTCGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTGAATGCTCTGATGAAACAGGATCAAGATCAATCTATTCAAATAAATGACGAATTTGGATTTGATGCTCAATCTCTCGGGTCGTCGTGTATATGA 2121 42.01 MIVEDRRANFLGENGDMDQFPIGMRVLAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVKKGVTHGACDYLLKPVRIEELKNIWQHVLRRKKSSAKNQNKWTNGNDTCQTVEVAKGFPSAVIADNGKPGKRRKDQDDDEEGGEEESTYENDDSTNQKKRRVVWTGELHRKFIAAVNHLGYEKAVPKKILDLMNDEDLTRENVASHLQALIFSFFSFKYRQYLKKMCTKEAQQCNMMAAFGGKDSSFRPMASLNGFSITGTGRLSNAAFSSYPSREIVDRLNSTAGLSLHGIASSGMIQQGTSHNLSSSLNVLRKPHPDLLLASQPPSIFNGISTSSNHIQLHRDKHTMPFKGSNLINDASSFTVSTSFPDARVAVGSSSNYDFSVSSHQLMLQGHKQQIHGSGEFGDQSSLKVSLNNPEDRGAGVSNILGHGQSNKNWQGSIQLPKFSSNVSLTGIYPPDGMPAINLTISSAQSDNDNFPVGFPSTSVDSSSQLDLKGETQCYEELIGSVVEAMNGKSKQQWEAAKPDYYGNHSSIVRNSLVSGNNVADPLNQSADQNNAVCLENIGSSLTNQLNNGAPTFIQHGAEISTTDTWMNYDGKVLMDPTKLQNGFANSSFNSLDELVNALMKQDQDQSIQINDEFGFDAQSLGSSCI 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47161794 47166170 + Maker00003360 Lcy4g2058 631584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2058 706 FunFam Two-component response regulator 206 278 - -
Lcy4g2058 706 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lcy4g2058 706 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lcy4g2058 706 CDD REC_typeB_ARR-like 26 140 - -
Lcy4g2058 706 MobiDBLite consensus disorder prediction 173 207 - -
Lcy4g2058 706 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lcy4g2058 706 Gene3D - 206 278 - -
Lcy4g2058 706 Pfam Myb-like DNA-binding domain 212 259 IPR001005 -
Lcy4g2058 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 290 IPR045279 GO:0009736(InterPro)
Lcy4g2058 706 PIRSF RR_ARR_type-B 5 706 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lcy4g2058 706 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 260 IPR006447 GO:0003677(InterPro)
Lcy4g2058 706 SUPERFAMILY Homeodomain-like 208 260 IPR009057 -
Lcy4g2058 706 SUPERFAMILY CheY-like 23 150 IPR011006 -
Lcy4g2058 706 Gene3D - 24 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1464 Lcy-Chr10:38572497 Lcy4g2058 Lcy-Chr4:47161794 1.29E-17 dispersed
Lcy2g0162 Lcy-Chr2:1259169 Lcy4g2058 Lcy-Chr4:47161794 5.11E-178 dispersed
Lcy2g0283 Lcy-Chr2:2258681 Lcy4g2058 Lcy-Chr4:47161794 9.33E-32 dispersed
Lcy2g0559 Lcy-Chr2:4789191 Lcy4g2058 Lcy-Chr4:47161794 3.66E-17 dispersed
Lcy4g2058 Lcy-Chr4:47161794 Lcy6g0193 Lcy-Chr6:1759863 2.18E-37 dispersed
Lcy4g2058 Lcy-Chr4:47161794 Lcy9g1879 Lcy-Chr9:43815993 2.04E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20015 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2058 K14491 - csv:101203718 1071.61