Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2077 | ATGGAACCCGCCGACTCCATCAATGGCGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCACTTGCCAATTCTTCCTCACAGGTCGCCATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAATGAGTTCTTCGTGCAAGATTGGAGGAGTCGTGAAGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTGTCATGCTTCTTGATTGGTCTGATTATGGGTCTTGTTGGCTTTTTCAACAACCTGGCCGTGGAGAATATTTCGGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCATATTCGCATCTGTCATTACGGCATTGATCTGCCCACAAGCAGCCGGCTCGGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGACGCCCCTGAAATATTATCGCCCCGGACATTGTTAGTGAAGATTATAGGCAGCATTTCTATTGTTTCCTCGTCTATGATCGTTGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAACATATTTGGTTTAACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGAGATCTTGTAACATGTGGAGCTGCCGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGCGCCCTTCTGTGGCGAGCATTTTTCACAACGGCTATCGTTGCTGTGGTATTACGCTCACTGATTGACATTTGTTTAAATGAATTATGTGGATTATTTGGTAAAGGAGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATATCACCTCAAAGATCTACCTCCTGTGCTTGCCCTTGCTTTTATTGGAGGCCTACTGGGAAGCTTATATAATTTTCTTTTAAGTAAAGTTCTTCGCATTTACAATCTCATACACGAGAAAGGCATCGTTTACAAGATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTCGGATTACCGTGGATTGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACAATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGTTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGACGATGCCATAAAAAATCTCTTCAGCCAGGACACAGACTCTGAGTTCCAGTTCTCATCAATGCTCACATTTTTCATTACTTGTTTTTCCTTGAGCATTCTCAGTTATGGGACGGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTTACTGGAGCTTCTTATGGTCGTTTTGTTGGAATGGTTGTCGGTTCATACACAAACCTGAGCCATGGCTTCTTTGCCATATTGGGTGCCGCTTCGTTTCTCGGGGGGTCAATGAGGACAACAGTTTCTCTCTGCGTTATTATGCTTGAATTGACCAATAACTTGTTGTTGTTGCCTTTAGTAATGTTGGTTCTCCTTATTTCCAAGACAGTAGCTGATGCTTTCAACAGTAATATATATAACCTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGACATGTTGAGCCTTACATGAGGCAGCTGACTGTCGCGGATGTGTTAACGAGTCCACTTCAATTATTGCACGGCATTGAGAAGGTTCGTAATGTAGTAAACGTTCTCAAATGGACGAGCCATCACGGATTTCCTGTCATTGACGAGCCTCCTTTCTCTGAATTCCCTGTTTTATATGGCCTAATTCTCAGAGCCCATCTTATTATGTTGCTAAAGAAGAAAGCTTTCTTGCCCATTCCAATACTAGGATCAAAACAGCTATTCTCAGCTGATGATTTTGCAAAGATGGGTTCGGGCGACGTTGATAGGATTGAAGATGTACAATTGACTGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTCGCCAATACTTCGCCTTGTACCGTCTTGGAGACAATGTCACTAGCAAAGGCTCTTCAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGGCAGAAAATGAAGTAGAATTGGACTTCGTCGACTTGAGTTCCGATATGAAATTCCCTCCTATTGATATTCAACATGCTGTTACGACTATAGAGTACGAACCGCTAGGACAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAGAGATTAAGAATCAAATTTCACATGAAGAAAAAATTCTTCTAGTGCAGCAGCAACAGACAGAGAGAAAAGGCAAGTGA | 2454 | 43.11 | MEPADSINGDEESIITPLLAPQKSLANSSSQVAIVGANVCPIESLDYEIFDNEFFVQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENISGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTIFASVITALICPQAAGSGIPEVKAYLNGVDAPEILSPRTLLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFNIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRAFFTTAIVAVVLRSLIDICLNELCGLFGKGGLIIFDTYSDFPTYHLKDLPPVLALAFIGGLLGSLYNFLLSKVLRIYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWIASCQPCPSSAREICPTIGRSGNFKKFQCVPGHYNDLASLIFNTNDDAIKNLFSQDTDSEFQFSSMLTFFITCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGSYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNVVNVLKWTSHHGFPVIDEPPFSEFPVLYGLILRAHLIMLLKKKAFLPIPILGSKQLFSADDFAKMGSGDVDRIEDVQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALQIFRETGLRHMLVIPKVPGAENEVELDFVDLSSDMKFPPIDIQHAVTTIEYEPLGQIARGWCIDSARLHARLHSEFASIAREEQMEEIKNQISHEEKILLVQQQQTERKGK | 817 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 47312170 | 47317161 | + | Maker00003647 | Lcy4g2077 | 631603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2077 | 817 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 576 | 722 | - | - | |
| Lcy4g2077 | 817 | PRINTS | Plant CLC chloride channel signature | 291 | 298 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Plant CLC chloride channel signature | 259 | 267 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Plant CLC chloride channel signature | 415 | 431 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Plant CLC chloride channel signature | 273 | 283 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy4g2077 | 817 | Pfam | Voltage gated chloride channel | 132 | 545 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | SUPERFAMILY | Clc chloride channel | 52 | 566 | IPR014743 | - | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 174 | 193 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 495 | 511 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 551 | 565 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 143 | 160 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 513 | 532 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 463 | 483 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PRINTS | Chloride channel signature | 238 | 257 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy4g2077 | 817 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 724 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Lcy4g2077 | 817 | SUPERFAMILY | CBS-domain pair | 567 | 721 | IPR046342 | - | |
| Lcy4g2077 | 817 | Gene3D | Clc chloride channel | 66 | 565 | - | - | |
| Lcy4g2077 | 817 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g0266 | Lcy-Chr13:2795702 | Lcy4g2077 | Lcy-Chr4:47312170 | 6.85E-193 | dispersed | |
| Lcy4g2077 | Lcy-Chr4:47312170 | Lcy6g1146 | Lcy-Chr6:13162333 | 1.09E-248 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy4g2077 | K05016 | - | csv:101216071 | 1288.09 |