Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2077 ATGGAACCCGCCGACTCCATCAATGGCGATGAGGAATCCATTATCACTCCCTTGCTTGCTCCTCAGAAATCACTTGCCAATTCTTCCTCACAGGTCGCCATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGATTACGAGATTTTTGATAATGAGTTCTTCGTGCAAGATTGGAGGAGTCGTGAAGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTGTCATGCTTCTTGATTGGTCTGATTATGGGTCTTGTTGGCTTTTTCAACAACCTGGCCGTGGAGAATATTTCGGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCATATTCGCATCTGTCATTACGGCATTGATCTGCCCACAAGCAGCCGGCTCGGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGACGCCCCTGAAATATTATCGCCCCGGACATTGTTAGTGAAGATTATAGGCAGCATTTCTATTGTTTCCTCGTCTATGATCGTTGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAACATATTTGGTTTAACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGAGATCTTGTAACATGTGGAGCTGCCGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGCGCCCTTCTGTGGCGAGCATTTTTCACAACGGCTATCGTTGCTGTGGTATTACGCTCACTGATTGACATTTGTTTAAATGAATTATGTGGATTATTTGGTAAAGGAGGACTTATAATATTTGATACCTACTCAGACTTTCCTACATATCACCTCAAAGATCTACCTCCTGTGCTTGCCCTTGCTTTTATTGGAGGCCTACTGGGAAGCTTATATAATTTTCTTTTAAGTAAAGTTCTTCGCATTTACAATCTCATACACGAGAAAGGCATCGTTTACAAGATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTCGGATTACCGTGGATTGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACAATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGTTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGACGATGCCATAAAAAATCTCTTCAGCCAGGACACAGACTCTGAGTTCCAGTTCTCATCAATGCTCACATTTTTCATTACTTGTTTTTCCTTGAGCATTCTCAGTTATGGGACGGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTTACTGGAGCTTCTTATGGTCGTTTTGTTGGAATGGTTGTCGGTTCATACACAAACCTGAGCCATGGCTTCTTTGCCATATTGGGTGCCGCTTCGTTTCTCGGGGGGTCAATGAGGACAACAGTTTCTCTCTGCGTTATTATGCTTGAATTGACCAATAACTTGTTGTTGTTGCCTTTAGTAATGTTGGTTCTCCTTATTTCCAAGACAGTAGCTGATGCTTTCAACAGTAATATATATAACCTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGACATGTTGAGCCTTACATGAGGCAGCTGACTGTCGCGGATGTGTTAACGAGTCCACTTCAATTATTGCACGGCATTGAGAAGGTTCGTAATGTAGTAAACGTTCTCAAATGGACGAGCCATCACGGATTTCCTGTCATTGACGAGCCTCCTTTCTCTGAATTCCCTGTTTTATATGGCCTAATTCTCAGAGCCCATCTTATTATGTTGCTAAAGAAGAAAGCTTTCTTGCCCATTCCAATACTAGGATCAAAACAGCTATTCTCAGCTGATGATTTTGCAAAGATGGGTTCGGGCGACGTTGATAGGATTGAAGATGTACAATTGACTGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTCGCCAATACTTCGCCTTGTACCGTCTTGGAGACAATGTCACTAGCAAAGGCTCTTCAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGGCAGAAAATGAAGTAGAATTGGACTTCGTCGACTTGAGTTCCGATATGAAATTCCCTCCTATTGATATTCAACATGCTGTTACGACTATAGAGTACGAACCGCTAGGACAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTGAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAGAGATTAAGAATCAAATTTCACATGAAGAAAAAATTCTTCTAGTGCAGCAGCAACAGACAGAGAGAAAAGGCAAGTGA 2454 43.11 MEPADSINGDEESIITPLLAPQKSLANSSSQVAIVGANVCPIESLDYEIFDNEFFVQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENISGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTIFASVITALICPQAAGSGIPEVKAYLNGVDAPEILSPRTLLVKIIGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFNIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRAFFTTAIVAVVLRSLIDICLNELCGLFGKGGLIIFDTYSDFPTYHLKDLPPVLALAFIGGLLGSLYNFLLSKVLRIYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWIASCQPCPSSAREICPTIGRSGNFKKFQCVPGHYNDLASLIFNTNDDAIKNLFSQDTDSEFQFSSMLTFFITCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGSYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLVMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNVVNVLKWTSHHGFPVIDEPPFSEFPVLYGLILRAHLIMLLKKKAFLPIPILGSKQLFSADDFAKMGSGDVDRIEDVQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALQIFRETGLRHMLVIPKVPGAENEVELDFVDLSSDMKFPPIDIQHAVTTIEYEPLGQIARGWCIDSARLHARLHSEFASIAREEQMEEIKNQISHEEKILLVQQQQTERKGK 817
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 47312170 47317161 + Maker00003647 Lcy4g2077 631603
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2077 817 CDD CBS_pair_voltage-gated_CLC_euk_bac 576 722 - -
Lcy4g2077 817 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy4g2077 817 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy4g2077 817 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy4g2077 817 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy4g2077 817 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy4g2077 817 Pfam Voltage gated chloride channel 132 545 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 SUPERFAMILY Clc chloride channel 52 566 IPR014743 -
Lcy4g2077 817 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy4g2077 817 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 724 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Lcy4g2077 817 SUPERFAMILY CBS-domain pair 567 721 IPR046342 -
Lcy4g2077 817 Gene3D Clc chloride channel 66 565 - -
Lcy4g2077 817 FunFam Chloride channel ClC3 66 383 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0266 Lcy-Chr13:2795702 Lcy4g2077 Lcy-Chr4:47312170 6.85E-193 dispersed
Lcy4g2077 Lcy-Chr4:47312170 Lcy6g1146 Lcy-Chr6:13162333 1.09E-248 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2077 K05016 - csv:101216071 1288.09