Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2085 ATGGACGAAAACGACAAGTGTGGCTGTTGGGCGGTCCTTAAACGCACCGTTTCAGATGCTTCCAAGTCCTCTCCTTCTTCCAAACACTCCATTCCTCGCGTTACCTTGCTTTACGATTCGGGTGCTCTCTCTAAACCCTTTCGTTTCCATTTTCAGAATGCTCTCAACAATGGAGTTCTTCAACTTACTCATTCTGATTCCGCCGTTGCGTTTCCAGCTACCGAGACGCGCTACCTTAATGCCAGCAGCCGAGATTTTTGCCCTCCGGCCGAAGCACGGCTATCCTTCGACAATGCTCCGCCGCCGCCGCCGTCCTCCGAGGACAGATATAAACGCCAGTTACTAAAATTTTCATTTCAGGAGCTAAGATCGGCGACCGGAAATTTTCGACCGGATAGCATACTCGGAGAAGGAGGGTTTGGATTCGTCTTCAAAGGGTGGATTGAAGAGAATGGCACAGCGCCGGCCAAACCTGGATCGGGAATCACCGTCGCTGTCAAAAGCTTGAAGCCGGATGGTCTTCAAGGCCACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGATACTGTATTGAAGATGATCAGAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAATCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCGCTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCAGAACCTGTCATATATAGAGATTTCAAGACATCAAACATATTGCTTGATACGGAATACAATGCGAAGCTTTCGGATTTTGGTTTGGCGAAGGCTGGGCCTCAGGGAGACAAAACACACGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCACCAGAATATCTAATGACGGGCCATTTGACGTCAAAAAGTGATGTCTATAGCTTCGGCGTTGTCCTACTCGAGATCTTAACTGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAGAACCTAGTGTCATGGGCTAGGCCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAGGGGGTTCAGAAAGTCTCTCGACTAGCTTCTCACTGCATAAGTAGAGATCCAAAATCTCGTCCCACCATGGAAGAAGTTGTCAAGGTTCTCATTCCACTACAGGACCTTAACGACCTTGCCATCCTAACATATCATTCGCGCTTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGGCTGCACCAGCTAACTTACACTCAGTCAAGAAACGTTAGAACCTCTCCTTTGAATGTCGGAATCGTTCATCGTCATCGATGA 1395 47.24 MDENDKCGCWAVLKRTVSDASKSSPSSKHSIPRVTLLYDSGALSKPFRFHFQNALNNGVLQLTHSDSAVAFPATETRYLNASSRDFCPPAEARLSFDNAPPPPPSSEDRYKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMEEVVKVLIPLQDLNDLAILTYHSRLSQQGRRKKKSDGLHQLTYTQSRNVRTSPLNVGIVHRHR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47399149 47405171 + Maker00003295 Lcy4g2085 631611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2085 464 FunFam Serine/threonine-protein kinase BIK1 102 214 - -
Lcy4g2085 464 Gene3D Phosphorylase Kinase; domain 1 103 214 - -
Lcy4g2085 464 Gene3D Transferase(Phosphotransferase) domain 1 215 424 - -
Lcy4g2085 464 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524(InterPro)
Lcy4g2085 464 FunFam Probable serine/threonine-protein kinase PBL8 215 428 - -
Lcy4g2085 464 ProSiteProfiles Protein kinase domain profile. 129 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2085 464 SUPERFAMILY Protein kinase-like (PK-like) 112 411 IPR011009 -
Lcy4g2085 464 CDD STKc_IRAK 135 411 - -
Lcy4g2085 464 Pfam Protein tyrosine and serine/threonine kinase 133 408 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2085 464 PANTHER OS01G0588500 PROTEIN-RELATED 105 412 IPR050823 -
Lcy4g2085 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1988 Lcy-Chr10:43966899 Lcy4g2085 Lcy-Chr4:47399149 1.58E-169 dispersed
Lcy4g2085 Lcy-Chr4:47399149 Lcy7g0253 Lcy-Chr7:2197519 2.06E-168 dispersed
Lcy2g0710 Lcy-Chr2:6268671 Lcy4g2085 Lcy-Chr4:47399149 1.00E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65882 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2085 - - - 0.0