Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2099 ATGTCAAGCTGCATCAACAGTGCACAAGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCACAGTGGCAGTGCAGCTGATTACAGGGTTGAATTAGGCTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCATTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 573 43.98 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSAADYRVELGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47576115 47580195 + Maker00003739 Lcy4g2099 631625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2099 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lcy4g2099 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Lcy4g2099 190 CDD HMG-box_SF 118 154 - -
Lcy4g2099 190 PANTHER PROTEIN YABBY 6-RELATED 8 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lcy4g2099 190 Gene3D High mobility group box domain 90 159 IPR036910 -
Lcy4g2099 190 SUPERFAMILY HMG-box 103 157 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2099 Lcy-Chr4:47576115 Lcy7g0168 Lcy-Chr7:1520058 4.47E-28 dispersed
Lcy7g0349 Lcy-Chr7:2922886 Lcy4g2099 Lcy-Chr4:47576115 3.53E-09 transposed
Lcy8g2028 Lcy-Chr8:46523495 Lcy4g2099 Lcy-Chr4:47576115 1.78E-25 transposed
Lcy2g0725 Lcy-Chr2:6394783 Lcy4g2099 Lcy-Chr4:47576115 2.66E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20017 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2099 K25796 - csv:101219877 372.859