Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2099 ATGTCAAGCTGCATCAACAGTGCACAAGAGCAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCTCAGGCATCAAACCACAGCCACAGTGGCAGTGCAGCTGATTACAGGGTTGAATTAGGCTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAAAAACCCTACAAATGATGATCAAAGGGTCATCAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACACATTCATTTTGGCCTCATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 573 43.98 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSAADYRVELGSSSKCNNKMKMRAPIKNPTNDDQRVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQTKNDGSEKHLMSVPGLHY 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47576115 47580195 + Maker00003739 Lcy4g2099 631625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2099 190 FunFam axial regulator YABBY 5-like 102 160 - -
Lcy4g2099 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Lcy4g2099 190 CDD HMG-box_SF 118 154 - -
Lcy4g2099 190 PANTHER PROTEIN YABBY 6-RELATED 8 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Lcy4g2099 190 Gene3D High mobility group box domain 90 159 IPR036910 -
Lcy4g2099 190 SUPERFAMILY HMG-box 103 157 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2099 K25796 - - csv:101219877 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2099 Lcy-Chr4:47576115 Lcy7g0168 Lcy-Chr7:1520058 4.47E-28 dispersed
Lcy7g0349 Lcy-Chr7:2922886 Lcy4g2099 Lcy-Chr4:47576115 3.53E-09 transposed
Lcy8g2028 Lcy-Chr8:46523495 Lcy4g2099 Lcy-Chr4:47576115 1.78E-25 transposed
Lcy2g0725 Lcy-Chr2:6394783 Lcy4g2099 Lcy-Chr4:47576115 2.66E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1797 . 78 236 C2C2-YABBY Transcription Factor Family AT2G45190 59.9 1.5e-43 173.3
Lcy12g1797 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 2.5e-44 176.0
Lcy2g0725 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 8.0e-43 171.0
Lcy12g1797 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 7.0e-51 198.0
Lcy2g0725 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.6e-63 239.6
Lcy4g2099 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Lcy12g1797 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.7 2.2e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20017 None None None None Lcy TF