Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2105 | ATGGTGCCATCAAAGAAGTTCAGAGGTGTTAGGCAACGACACTGGGGATCTTGGGTTTCTGAAATTCGCCACCCTCTTCTGAAGAGGAGAGTTTGGTTAGGGACGTTTGAGACGGCGGAGGAGGCGGCGAGAGCGTACGATCAGGCAGCCGTGTTAATGAGCGGTCGGAATGCGAAAACCAACTTTCCGATGAGCCAAACGACGACGTCGGAATTAGAAAAACCAGACAAGATCCATTCTCCATCTTCTCCCAAGGGCTTATCGGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCGTCGCCGTCGATGACGTGTCTCCGACTCGACACCGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCACCTCGGTAAGAACAACTCCTCCGCCGCCGTCGCTGCCGCCGCTTCCGGCGGCAATGACGACGGTGGACGGTTGCGGAACAACAACAACAATGGTTCTTTTTCGAATTTGAGCTCGCAAGGTGGAGCTCCAATGGCGGCTGGGGGGCCCCACATGAGGAGCTTGCAAATGGATGAAGAAGAAAGAATTGCACTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTACAGTAACCCATCTGACATTCACGATCAAGGGGAACCAAGTTTTTACCCTCTCTAA | 693 | 53.54 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTTTSELEKPDKIHSPSSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKNNSSAAVAAAASGGNDDGGRLRNNNNNGSFSNLSSQGGAPMAAGGPHMRSLQMDEEERIALQMIEELLSRNYSNPSDIHDQGEPSFYPL | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 47644326 | 47645780 | + | Maker00003463 | Lcy4g2105 | 631631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2105 | 230 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 137 | IPR050913 | - | |
| Lcy4g2105 | 230 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lcy4g2105 | 230 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
| Lcy4g2105 | 230 | MobiDBLite | consensus disorder prediction | 150 | 188 | - | - | |
| Lcy4g2105 | 230 | MobiDBLite | consensus disorder prediction | 60 | 85 | - | - | |
| Lcy4g2105 | 230 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) | |
| Lcy4g2105 | 230 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g2105 | Lcy-Chr4:47644326 | Lcy13g1039 | Lcy-Chr13:22711472 | 1.73E-129 | dispersed | |
| Lcy12g0596 | Lcy-Chr12:7356400 | Lcy4g2105 | Lcy-Chr4:47644326 | 1.60E-55 | wgd | |
| Lcy2g0734 | Lcy-Chr2:6485901 | Lcy4g2105 | Lcy-Chr4:47644326 | 4.99E-76 | wgd | |
| Lcy4g2105 | Lcy-Chr4:47644326 | Lcy9g1835 | Lcy-Chr9:43427351 | 1.34E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20018 | None | None | None | None | Lcy | TF |
Pathway information