Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2125 ATGGCAGCCATAGCCCGAGACGAGTCCGACTACGACAGCAGTTGCTCCTCCATAACCGTCCCCGACTCCAGCCGCAGCTGGATGAGCAACCTCAGCTTCGGCAGCCGCCGCCGCAGCAGCTCAGCCGCAGACCCCGCCACCTCTCCTCCTCAGAAGCCCCACAAGGCCAACCAAGCGGCGTGGGAGGCCATGCGGTGGCTCCGGGGAGTGAAGGGTGGGCGGGTCGGCCTGGAGCACTTCCGGCTGCTGCGGCGGCTGGGCAGCGGCGACATTGGGAACGTCTACCTCTGCCAGATAAGGAACCCGATGGTGGGCCTGCCGCAGTGCTTCTACGCCATGAAAGTGGTCGACAGGGAAGCGCTTTCCGTCAGGAACAAGGTCCGGAGAGCCGACATGGAGAAGGAGATTCTGAAACTTCTCGATCATCCGTTCTTGCCGACGCTTTACGCCGAGTTTGAGGCTTCTCATTACTCTTGTTTGGTTATGGAGTTCTGTCCCGGCGGGGATTTGTACGCCGCCCGCCAACGCCACCCCGGGAAACGATTCTCCATTTCTTCTGCTAAGTTTTATGCGGCGGAGATAATTTTAGCGCTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGACTTGAAGCCGGAAAACGTGCTGGTTAGAGAAGACGGCCACATAATGCTGTCGGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCCAAGCTCATCCGCTGCAGGACCACCGCCTCCGACGCCGCCGAACGCCACCTCAGAACCACCTCCTCTACCACCTCCTGCGCCGCCGCCCCAATCCAGCCCGTCCTCTCCTGTTTCTCCGCCGCCCGCCGCAGAAGATCCACCACCGTCACCACCATCACCGAACACGCCGCCGCCGCCGACCACCACGACGACGACGCCAGCGACGACGGCGAGTTCGACCCGGAGCCGGAACTGGTCGCCGAGCCGATCAACGCCCGGTCGAAATCCTTCGTCGGAACCCACGAGTACTTGGCGCCGGAGGTGATTTCCGGGCAGGGGCACGGCAGCGCCGTCGACTGGTGGACGCTGGGGATTTTCTTATACGAAATGCTGTACGGGAAAACCCCTTTTAAAGGGGAGAATAACGAGAAAACCCTAATCAACATTCTGAAGCAGCCATTGGCGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATCTGATTAGGAAGCTTTTGGTCAAGAATCCCAAAAAGAGAATTGGAGGCTTAAAGGGTTCGGTTGAAATCAAAAGACATGAGTTTTTCAAAGGGGTAAATTGGGCACTTATCCGCTCCGTCCGACCGCCCCAAATCCCTAATTCCGAGCATCTGCTTCACAACAACATTAACCGATCGAAATACCCTTCTAATTACTTACCCAAATTGAGCAAGAAACAACGAGAGCAACCCTACCAAATCCCTCCTCACCATTTCGATTACTTCTAG 1488 56.32 MAAIARDESDYDSSCSSITVPDSSRSWMSNLSFGSRRRSSSAADPATSPPQKPHKANQAAWEAMRWLRGVKGGRVGLEHFRLLRRLGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALSVRNKVRRADMEKEILKLLDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRHPGKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTASDAAERHLRTTSSTTSCAAAPIQPVLSCFSAARRRRSTTVTTITEHAAAADHHDDDASDDGEFDPEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLYGKTPFKGENNEKTLINILKQPLAFPRIGFSSSKEYEEMVKVEDLIRKLLVKNPKKRIGGLKGSVEIKRHEFFKGVNWALIRSVRPPQIPNSEHLLHNNINRSKYPSNYLPKLSKKQREQPYQIPPHHFDYF 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47796637 47799012 + Maker00003509 Lcy4g2125 631651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2125 495 FunFam protein kinase PINOID 165 233 - -
Lcy4g2125 495 Gene3D Transferase(Phosphotransferase) domain 1 324 454 - -
Lcy4g2125 495 ProSiteProfiles Protein kinase domain profile. 80 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2125 495 PANTHER FLIPPASE KINASE 1-RELATED 30 460 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy4g2125 495 FunFam protein kinase PINOID 2 78 164 - -
Lcy4g2125 495 MobiDBLite consensus disorder prediction 1 56 - -
Lcy4g2125 495 SUPERFAMILY Protein kinase-like (PK-like) 70 457 IPR011009 -
Lcy4g2125 495 MobiDBLite consensus disorder prediction 295 315 - -
Lcy4g2125 495 Gene3D Phosphorylase Kinase; domain 1 78 164 - -
Lcy4g2125 495 Pfam Protein kinase domain 81 235 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2125 495 Pfam Protein kinase domain 326 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2125 495 FunFam serine/threonine-protein kinase D6PK-like 324 454 - -
Lcy4g2125 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2125 495 CDD STKc_phototropin_like 79 453 - -
Lcy4g2125 495 Gene3D Transferase(Phosphotransferase) domain 1 165 234 - -
Lcy4g2125 495 MobiDBLite consensus disorder prediction 10 54 - -
Lcy4g2125 495 SMART serkin_6 80 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2125 Lcy-Chr4:47796637 Lcy5g1683 Lcy-Chr5:39130588 8.53E-132 dispersed
Lcy5g2612 Lcy-Chr5:48808769 Lcy4g2125 Lcy-Chr4:47796637 7.28E-07 dispersed
Lcy4g2125 Lcy-Chr4:47796637 Lcy5g1341 Lcy-Chr5:31986784 1.29E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65883 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2125 K08286 - csv:101202905 781.556