Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2143 | ATGGCTCCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTTTGACTCAGTGGGTCGACTCGGAGCCCACTCAGGATAAACAAGCCCTTCTCGATTTCCTCTCTAAAGCTCCTCACGCCAATCGGGTTCAATGGAATTCCTCTACTTCCGTCTGTAATTGGGTCGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTCCGTTTGCCCGGCGTTGGCCTCGTCGGTCCGATTCCGGCCAACACCATTGGGAAGTTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCGAATCGACTCTCCGGCGAGATCCCCTCGGATTTTTCTAATTTGATAATGCTGCGGAATCTGTATCTTCAGGATAATGCCTTCTCCGGCGAGTTTCCGCCGAGTTTGACTCGGTTGAATCGGCTGACTCGGCTGGATTTGTCGTCGAATAACTTTTCCGGTCCGATTCCGCCGGCTGTTGACAATCTGACTCATTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCAATCCCGAGCATCTCGGCCGTTAATTTGACGAACTTCAACGTCTCTAACAACAAACTCAACGGCTCGATTCCAAATTCGTTAGCGAAATTCCCAGCCTCCTCCTTCGCCGGAAATCTAGATCTCTGCGGCGGGCCATTCCCCTCCTGCAACCCATCCACTCCCTCTCCAGCTCCGTCGCAAAACCAACCGCCATCCGACACCGGCGGTGGAAAATCGAAGAAGCTCTCCACAGCCGCCATAATCGGGATCATCATCGGCGCAGTGTTCGCGGCGTTTCTCCTCCTCCTCATCCTCCTCCTCTGCATCCGCCGCCGGTCCCGCCACCAACCCGCGAAGCCACAGAAGGCATCGGCGGCAACAGCAGCAGCGAGAGCGATTCCCGTGGCGGAGGCTGGGACGTCGTCGTCGAAAGACGACATTACCGGGGGGTCGGTGGAGGCGGCGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAATTTCGATTTGGAAGATCTGTTGAGGGCGTCGGCGGAGGTGTTGGGGAAAGGGAGCGTGGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAGGAATTCGAGACGCAAATGGAGGTTCTGGGCAAGATCAAACATGAAAATGTGGTTCCGCTTCGAGCTTTTTACTTCTCCAAAGATGAGAAATTGCTGGTTTATGATTACATTTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGCTCTGGCAGGACACCACTGGACTGGGACAGTAGAATGAGAATAGCACTAAGCGCCGGCAGAGGACTGGCCCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATAAAATCCTCCAACATCCTTCTCCGGCCAGACCACGACGCCTGCATCTCCGACTTCGGCCTCAACCCACTCTTCGGCACCGCCACGCCGCCGAACCGCGTCGCCGGCTACCGAGCACCGGAGGTCGTCGAGACCCGAAAAGTCACCTTCAAATCCGACGTTTACAGCTACGGCGTCCTCCTCCTCGAGCTCTTGACCGGCAAAGCCCCCAACCAACAGTCCCTCGGCGAGGACGGCATCGACCTCCCCCGCTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCCGAACTGATGCGCTTCCACAACATCGAAGAAGAGATGGTTCAGCTGCTTCAAATCGCAATGTCTTGCGTGTCGACGGTCCCCGATCAGCGGCCGACGATGCCGGAAGTGGTACGGATGATCGAGGATATGAACAGAAGCGAGACCGACGAGGGGTTGCGCCAGTCCTCCGACGACCCCTCGAAAGGGTCCGACGTGAACACGCCGCCGGCGGAATCGAGAACTCCGCCGAGAGTGACGCCGTAG | 1956 | 56.54 | MAPAISLCSVFLLLLTQWVDSEPTQDKQALLDFLSKAPHANRVQWNSSTSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLIMLRNLYLQDNAFSGEFPPSLTRLNRLTRLDLSSNNFSGPIPPAVDNLTHLSGIFLQNNGFSGSIPSISAVNLTNFNVSNNKLNGSIPNSLAKFPASSFAGNLDLCGGPFPSCNPSTPSPAPSQNQPPSDTGGGKSKKLSTAAIIGIIIGAVFAAFLLLLILLLCIRRRSRHQPAKPQKASAATAAARAIPVAEAGTSSSKDDITGGSVEAAERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSAGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPTMPEVVRMIEDMNRSETDEGLRQSSDDPSKGSDVNTPPAESRTPPRVTP | 651 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 47944602 | 47950543 | - | Maker00003394 | Lcy4g2143 | 631669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2143 | 651 | MobiDBLite | consensus disorder prediction | 613 | 651 | - | - | |
| Lcy4g2143 | 651 | PANTHER | OS05G0588300 PROTEIN | 8 | 621 | IPR050994 | - | |
| Lcy4g2143 | 651 | Gene3D | Ribonuclease Inhibitor | 183 | 229 | IPR032675 | - | |
| Lcy4g2143 | 651 | Pfam | Protein kinase domain | 350 | 609 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2143 | 651 | Gene3D | Transferase(Phosphotransferase) domain 1 | 421 | 635 | - | - | |
| Lcy4g2143 | 651 | MobiDBLite | consensus disorder prediction | 223 | 247 | - | - | |
| Lcy4g2143 | 651 | CDD | STKc_IRAK | 352 | 614 | - | - | |
| Lcy4g2143 | 651 | SUPERFAMILY | L domain-like | 45 | 208 | - | - | |
| Lcy4g2143 | 651 | MobiDBLite | consensus disorder prediction | 629 | 643 | - | - | |
| Lcy4g2143 | 651 | FunFam | Probable inactive receptor kinase RLK902 | 23 | 181 | - | - | |
| Lcy4g2143 | 651 | SUPERFAMILY | Protein kinase-like (PK-like) | 350 | 611 | IPR011009 | - | |
| Lcy4g2143 | 651 | Gene3D | Ribonuclease Inhibitor | 23 | 182 | IPR032675 | - | |
| Lcy4g2143 | 651 | Gene3D | Phosphorylase Kinase; domain 1 | 314 | 420 | - | - | |
| Lcy4g2143 | 651 | FunFam | pollen receptor-like kinase 1 | 316 | 420 | - | - | |
| Lcy4g2143 | 651 | ProSiteProfiles | Protein kinase domain profile. | 346 | 614 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2143 | 651 | Pfam | Leucine rich repeat N-terminal domain | 24 | 60 | IPR013210 | - | |
| Lcy4g2143 | 651 | MobiDBLite | consensus disorder prediction | 613 | 628 | - | - | |
| Lcy4g2143 | 651 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 421 | 625 | - | - | |
| Lcy4g2143 | 651 | Pfam | Leucine Rich Repeat | 90 | 112 | IPR001611 | GO:0005515(InterPro) | |
| Lcy4g2143 | 651 | Pfam | Leucine Rich Repeat | 115 | 136 | IPR001611 | GO:0005515(InterPro) | |
| Lcy4g2143 | 651 | Pfam | Leucine Rich Repeat | 184 | 205 | IPR001611 | GO:0005515(InterPro) | |
| Lcy4g2143 | 651 | Pfam | Leucine Rich Repeat | 138 | 160 | IPR001611 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1941 | Lcy-Chr10:43482946 | Lcy4g2143 | Lcy-Chr4:47944602 | 4.39E-66 | dispersed | |
| Lcy4g2143 | Lcy-Chr4:47944602 | Lcy5g2369 | Lcy-Chr5:46513497 | 1.96E-144 | dispersed | |
| Lcy1g1630 | Lcy-Chr1:16652898 | Lcy4g2143 | Lcy-Chr4:47944602 | 9.37E-172 | transposed | |
| Lcy5g0360 | Lcy-Chr5:3623020 | Lcy4g2143 | Lcy-Chr4:47944602 | 1.33E-104 | transposed | |
| Lcy8g1684 | Lcy-Chr8:43400948 | Lcy4g2143 | Lcy-Chr4:47944602 | 1.14E-171 | transposed | |
| Lcy2g0786 | Lcy-Chr2:6971897 | Lcy4g2143 | Lcy-Chr4:47944602 | 1.94E-281 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65884 | None | None | None | None | Lcy | PK |
Pathway information