Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2157 ATGAAGAGCGATACCCATTTCAACATTCATCTTTCGTTTCTAATTTTCCTCTTCTTCGGCACTCTTCTGTGCCTCTCTTCAGCTATTTCTGAAGAGTTTCTTCAAGTTTCCGGCCATGGCGGCGGCGGTGGCGGTAGCGGCCTCACCGACGCCGAAGCTCACTACATCCGTCAACGCCAACTCCTTTACTACAGAGACGAATTCGGCGACCGTGGTGAAGAAGTCACCGTCGATCCCAAGCTAGTTTTTGAAAACGACAGAATCAGAAATGCTTACATCGCATTACAAGCTTGGAAGCAAGCGATTCTCTCTGACCCTTTGAATCTCACTCGCAATTGGGTTGGATCTGATGTTTGTAGCTACAAAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCCTCGGTCCGTACGGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATACTTGCCGGAGGAGCTTGGCCTTCTTGTGGATCTTGCATTGTTTCATATCAACTCCAATCGCTTCTGCGGCACTGTTCCTCAGAAGTTTAAGCACTTGAAGTTGCTGTTCGAGTTGGATCTGAGCAACAATCGCTTCGCCGGAAAGTTCCCTCGGGTGGTTCTCGAGCTGCCGCAGCTGAAGTTTTTGGATCTGAGATTCAACGAGTTTGAAGGGACTGTCCCTAAGGAGCTGTTCGACAAGGATTTGGACGCCATTTTCATCAACCACAACAGATTCCGGTTTGACTTGCCGGAAAATTTCGGAAACTCGCCGGTTTCGGTGATTGTTCTTGCTAATAATAAATTCCATGGCTGTGTTCCGGGGAGCATTGGGAATATGACGAGGTTGAATGAGATTATTCTGATGAATAATGGGTTCCGGTCGTGTTTGCCGTCGGAGATTGGGTTGCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAGTTTTTTGGGTCTTTGCCGGAGACGATCGGCGGAATGGTGAGCTTAGAGCAGCTGAATGTGGCGCATAATTTCTTGTCGGGGAAGATTCCGGACAGTATTTGTAAGTTGCCGAATCTGCAGAACTTTACTTACTCGTATAATTTCTTTACTGGAGAAGCGCCGTCGTGCTTGGCGTTGCCGGCGTTTGATGATCGGAGGAACTGTCTACCGGAGCGGCCGGTGCAACGGTCGGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCCTCTCCGCCACCTGTTGTTGTTCCATCTCCGCCGCCACCTGTTTCCTCTCCTCCGCCACCTGTTTCCGCTTCACACCCCATTTACCGACCACGCCCTCCTCCGCCACCGTCCCCCTCTCCCCCTCCACCGCCAGTTTACTCTCCCCCGCCACCTCCACCTTCACCACCGCCGCCTTCTCCCCCGCCCCCACCACCGCCTGTTTACTCTCCACCCCCACCTCCCCCATCTCCTCCGCCGCCTTCTCCGCCACCACCTTCCCCACCACCGCCCTCACCCCCACCGCCGCCCCCACCAGTTTACTCTCCACCCCCACCCCCACCCCCACCATCTCCACCACCACCCTCACCCCCACCGCCAGTTTACTCTCCACCCCCACCTCCGCCCTCTCCTCCGCCACCGTCTCCTCCTCCCCCATCGCCGCCGCCACCGGCCCCGGTGTATTGTGTCCGACCATCACCACCACCTCCACCACCAAACTCACCCCCACCTCCTCCATTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCACCACCCAACTCTCCACCAATGTACTCTCCTCCGCCACCACCCCACTCGCCGCCTCCTCCGCCGCATTCACCTCCACCTCCAATCTATCCGTACTTATCTCCCCCACCTCCTCCGCCTGTCTATTCCCCACCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCACCGCCGCCGCCATGTATAGAGTATCATGAACCCCCACCGCCACCTTCACCATCACCACCGCCGCCCATCCAGTACCTTCCTCCGCCGTCTCCTTCACCACCACCACCACCGCCACCTACCCCAGTTTACCATTCACCTCCCCCACCGGTTTACTACTCTCCACCGCCACCACCGTCACCATCACCTCCGCCGCCGACTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA 2283 55.98 MKSDTHFNIHLSFLIFLFFGTLLCLSSAISEEFLQVSGHGGGGGGSGLTDAEAHYIRQRQLLYYRDEFGDRGEEVTVDPKLVFENDRIRNAYIALQAWKQAILSDPLNLTRNWVGSDVCSYKGVFCAPAPDNSSVRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPQKFKHLKLLFELDLSNNRFAGKFPRVVLELPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGLLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPDSICKLPNLQNFTYSYNFFTGEAPSCLALPAFDDRRNCLPERPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPPPPVSSPPPPVSASHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPAPVYCVRPSPPPPPPNSPPPPPLFSPPPPVYYYNSPPPPNSPPMYSPPPPPHSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYLPPPSPSPPPPPPPTPVYHSPPPPVYYSPPPPPSPSPPPPTASPPPSPVYEGPLPPIYGVSYASPPPPPFY 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48125563 48127845 - Maker00003744 Lcy4g2157 631683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2157 760 MobiDBLite consensus disorder prediction 669 704 - -
Lcy4g2157 760 Gene3D Ribonuclease Inhibitor 92 252 IPR032675 -
Lcy4g2157 760 MobiDBLite consensus disorder prediction 428 564 - -
Lcy4g2157 760 Pfam Leucine rich repeat 164 219 IPR001611 GO:0005515(InterPro)
Lcy4g2157 760 Pfam Leucine Rich Repeat 327 349 IPR001611 GO:0005515(InterPro)
Lcy4g2157 760 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Lcy4g2157 760 Pfam Leucine rich repeat N-terminal domain 94 126 IPR013210 -
Lcy4g2157 760 FunFam Leucine-rich repeat extensin-like protein 1 92 253 - -
Lcy4g2157 760 FunFam Leucine-rich repeat extensin-like protein 5 254 393 - -
Lcy4g2157 760 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 542 IPR051582 -
Lcy4g2157 760 Gene3D Ribonuclease Inhibitor 253 396 IPR032675 -
Lcy4g2157 760 SUPERFAMILY L domain-like 92 373 - -
Lcy4g2157 760 MobiDBLite consensus disorder prediction 718 742 - -
Lcy4g2157 760 PRINTS Proline rich extensin signature 416 428 - -
Lcy4g2157 760 PRINTS Proline rich extensin signature 466 487 - -
Lcy4g2157 760 PRINTS Proline rich extensin signature 432 448 - -
Lcy4g2157 760 PRINTS Proline rich extensin signature 453 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2157 Lcy-Chr4:48125563 Lcy9g2147 Lcy-Chr9:46089140 1.36E-42 dispersed
Lcy2g0804 Lcy-Chr2:7206896 Lcy4g2157 Lcy-Chr4:48125563 2.06E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2157 - - - 0.0