Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2167 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCTCCGGCGACCAATACGACGTCTCCGCCGCCGGCAACCCCCACTGCACCGCCCCCATCCACGCCGTCGCAGCCGCCGCCGTCCTCTACACCTCCACCAACTACCACTCCGTCGCCGCCGTCCGCCGCAACACCGCCGACCCCTTCTCAGCCTCCGCCAACCTCCGCCCCACCTCCAGCCACCCCGTCGTCGCCGCCGCCGCCGTCTACTCCCCAGCCCGCCCCGCCCACTGCCTCTCCCTCACCGCCGGCTTCCTCTCCTCCGCCGTCTACGCCATCTACTCCCTCAACTTCTCCGCCTCCTCCGTCTTCTACCAGCCCTCCGTCTCCTCCGGCCCCGGCCGGCCGCAGTCCGCCTCCTCCGACTTCTCGCACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCGGCAACGTCGTCGTCGTCGCCGCCATCCTCGTCGTCGTCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTTAGTATATTGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGCGATGAAGAAGGATTTTATCCACACCCTCCGCCTGAACCAAAAGTTGACCCTTATGGTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTGCCGCCCGATCCTGTGATCGGGATGGCGCCGAAGCCATCTCCTCCCCCGGCAGTTGCATCCCGACCCCCGCATTCTCCGACTGGCGTTCGGCCTCCGCCTCCGCAGCTCTATATGAGTAGCAGTGGAGGTTCAGGCTCTATGTATTCCGGGCCTGAAAATCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCTTTTGGTTTCTCAAAGAGTTCTTTTACTTATGAGGAATTGGCAATGGCGACCGATGGATTTTCGGATGCCAATCTCCTTGGACAGGGCGGATTCGGATACGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGAAGCGGGCAGGGCGAACGAGAATTCCAGGCCGAAGTCGATACGATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCTCAACTGGACCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTCCATTTACATGGTAAAGCTAAAGCCATAGTTCCAATTCTTGCTCCTCTTGTAATGTGCAATCTTATTGCACTTGGCATGAGAAGTAAAGGGCGACCGACCATGGATTGGCAGACCAGACTTAGAATCGCTTTAGGATCAGCAAAAGGATTAGCTTATCTTCATGAGGATTGTCACCCGAGAATCATTCATCGCGATATTAAAGCAGCTAACATACTGTTGGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTTCTTCTGATGCCAATACCCATGTATCGACTCGAGTGATGGGTACTTTCGGGTACGACCTTTCTCGATTCCTGTTATTTTCAATTGCTGTTCGAGGAAGATCGCCTTTTACTGCTTCTTGTCTTTCTAGAATGACTCGAGCACGAGTCTCATTTCGATATGTGAAGTACGCAGCATGTCAGATTCCTAAAGAACTACTTGATTCTCGGCTGTATCATATTATTGCTATATCGATTCGTTATTTTTTTTTTCTCAATCTTTCCCTTCCTACATTCAGGTATCTTGCACCAGAGTATGCCTCAAGTGGCAAACTTACTGACAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACCGGTCGTCGACCAGTCGATACGAGTAACACTTTCATGGAAGATAGTCTCGTAGACTGGGCTAGGCCATTATTGAACCGAGCTGTAGAAGATGGAAACTTCGATGCTTTGGTCGATCCAAGGCTGCAGAACAACTACAACCACAATGAGATGGCTCGTATGATCGACTGCGCTGCAGCTTGTGTGCGACATTCTGCAAGGCGCCGACCACGAATGAGCCAGGTAGTACGAGCGCTCGAAGGAGACGCGTCACTATCGGATCTCAACGAAGGAGTCAGACCCGGGCAGAGCTCAATGTACAGCTCTCATGGAAGCTCAGACTACGACACCCAACAGTACAATGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCACGGAGTATGGAGCAAGCAGCGAATACAGCGGACCGACGAGCGAGTACGGGCTGTACCCATCGGGGTCGAGCAGTGAAGGGCAAACCACGAGAGAAATGGAGATGAGAACAGGGAAGAAAGAGAGTCGAGGCTTCAGCGGAGGCTCTTGA 2337 52.72 MSTPTPAPTSPPATNTTSPPPATPTAPPPSTPSQPPPSSTPPPTTTPSPPSAATPPTPSQPPPTSAPPPATPSSPPPPSTPQPAPPTASPSPPASSPPPSTPSTPSTSPPPPSSTSPPSPPAPAGRSPPPPTSRTPSTPSRSPPPPATSSSSPPSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPEPKVDPYGGQQQWQHNAPLPPDPVIGMAPKPSPPPAVASRPPHSPTGVRPPPPQLYMSSSGGSGSMYSGPENPLPPPPPPPMAFGFSKSSFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDTISRVHHKHLVSLVGYCSTGPQRLLVYEFVPNNTLEFHLHGKAKAIVPILAPLVMCNLIALGMRSKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPRIIHRDIKAANILLDFKFEAKVADFGLAKFSSDANTHVSTRVMGTFGYDLSRFLLFSIAVRGRSPFTASCLSRMTRARVSFRYVKYAACQIPKELLDSRLYHIIAISIRYFFFLNLSLPTFRYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRAVEDGNFDALVDPRLQNNYNHNEMARMIDCAAACVRHSARRRPRMSQVVRALEGDASLSDLNEGVRPGQSSMYSSHGSSDYDTQQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTGKKESRGFSGGS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48245933 48249962 + Maker00003612 Lcy4g2167 631693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2167 778 Gene3D Transferase(Phosphotransferase) domain 1 561 693 - -
Lcy4g2167 778 Gene3D Transferase(Phosphotransferase) domain 1 415 501 - -
Lcy4g2167 778 Gene3D Phosphorylase Kinase; domain 1 291 384 - -
Lcy4g2167 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2167 778 MobiDBLite consensus disorder prediction 732 760 - -
Lcy4g2167 778 Pfam Protein tyrosine and serine/threonine kinase 572 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2167 778 Pfam Protein tyrosine and serine/threonine kinase 314 487 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2167 778 MobiDBLite consensus disorder prediction 193 285 - -
Lcy4g2167 778 MobiDBLite consensus disorder prediction 1 151 - -
Lcy4g2167 778 MobiDBLite consensus disorder prediction 692 712 - -
Lcy4g2167 778 MobiDBLite consensus disorder prediction 228 258 - -
Lcy4g2167 778 FunFam Os07g0541700 protein 413 496 - -
Lcy4g2167 778 MobiDBLite consensus disorder prediction 731 778 - -
Lcy4g2167 778 FunFam proline-rich receptor-like protein kinase PERK1 287 384 - -
Lcy4g2167 778 PRINTS Proline rich extensin signature 4 20 - -
Lcy4g2167 778 PRINTS Proline rich extensin signature 24 41 - -
Lcy4g2167 778 PRINTS Proline rich extensin signature 51 76 - -
Lcy4g2167 778 SMART serkin_6 309 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2167 778 MobiDBLite consensus disorder prediction 688 712 - -
Lcy4g2167 778 ProSiteProfiles Protein kinase domain profile. 309 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2167 778 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 132 499 IPR047117 -
Lcy4g2167 778 SUPERFAMILY Protein kinase-like (PK-like) 282 681 IPR011009 -
Lcy4g2167 778 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524(InterPro)
Lcy4g2167 778 MobiDBLite consensus disorder prediction 1 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2167 Lcy-Chr4:48245933 Lcy6g0958 Lcy-Chr6:9927952 2.68E-162 dispersed
Lcy2g0819 Lcy-Chr2:7416777 Lcy4g2167 Lcy-Chr4:48245933 2.18E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65885 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2167 - - - 0.0