Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2174 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCGGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTTGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCGAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCGAAGCCGCAGCCGCAGATGGTGGTGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACACTCACGGTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCATAAATTGTTACAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCATAACAAAGGATGCCACTGCAAGAAATCTGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGGGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACCTATCCACTAATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCCCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTTGGAAGCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTGATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCCGCCAAGACATTTCAAGACCAAACGAATGCTACTGAAAAGCAAGCTGATTGTCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTACAGAAAACAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGACCGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACCTTAGCTTTGATGTGCGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAACGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTAACGAAGTTTCGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACCAACTCAACAATGGCACTACAAATTCTAGAACTGAAACTCAAACTCATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCGATACCACCGTCAGTGAAGACATCTCCGACGGTAACTGCAGCAGTCATGACCCTTAGCAACGATCAACGACAGAAAGTTTTGCCTCTGTCTTGA 1770 46.21 MGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQPQMVVASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTNRPVPFQQANHIRAPAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQTETSVASSTQDRLQKTDASDEKAAADDRSSANQTDKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLTGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEHQLNNGTTNSRTETQTHLGQLNNKVTKSSIPPSVKTSPTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48293381 48298239 - Maker00003805 Lcy4g2174 631700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2174 589 MobiDBLite consensus disorder prediction 17 32 - -
Lcy4g2174 589 PANTHER TESMIN/TSO1-RELATED 31 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy4g2174 589 MobiDBLite consensus disorder prediction 375 448 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 375 401 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 92 119 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 44 77 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 402 417 - -
Lcy4g2174 589 SMART CXC_2 117 157 IPR033467 -
Lcy4g2174 589 SMART CXC_2 202 243 IPR033467 -
Lcy4g2174 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 418 432 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 1 78 - -
Lcy4g2174 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Lcy4g2174 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2174 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1571 Lcy-Chr11:39532075 Lcy4g2174 Lcy-Chr4:48293381 3.95E-19 dispersed
Lcy2g0828 Lcy-Chr2:7480306 Lcy4g2174 Lcy-Chr4:48293381 9.68E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g2174 . 90 519 CPP Transcription Factor Family AT2G20110 60.9 2.3e-138 490.0
Lcy2g0828 . 102 379 CPP Transcription Factor Family AT2G20110 65.9 1.2e-102 371.3
Lcy2g0828 . 113 380 CPP Transcription Factor Family AT5G25790 52.4 5.2e-75 279.3
Lcy4g2174 . 1 526 CPP Transcription Factor Family AT4G29000 56.1 1.6e-153 540.4
Lcy2g0828 . 81 377 CPP Transcription Factor Family AT4G29000 68.0 1.1e-112 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20024 None None None None Lcy TF