Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2174 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCGGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTTGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCGAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCTCAGAATCTTCCGCAAGCTCAGCCGAAGCCGCAGCCGCAGATGGTGGTGGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACACTCACGGTGTCTAAAATTGTATTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCATAAATTGTTACAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCATAACAAAGGATGCCACTGCAAGAAATCTGGTTGTCTAAAAAAATATTGCGAGTGTTTCCAGGCCAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGGGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCGACAGCCAAGGACCTATCCACTAATAGACCAGTGCCATTTCAACAGGCAAATCATATCAGAGCCCCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTTGGAAGCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTGATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCCGCCAAGACATTTCAAGACCAAACGAATGCTACTGAAAAGCAAGCTGATTGTCAGACAGAAACTTCTGTTGCATCATCCACTCAAGATAGGTTACAGAAAACAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGACCGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACCTTAGCTTTGATGTGCGATGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAACGGGTCCTGGCTGCAGCACATCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTAACGAAGTTTCGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAGTGTTCATCTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACCAACTCAACAATGGCACTACAAATTCTAGAACTGAAACTCAAACTCATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCGATACCACCGTCAGTGAAGACATCTCCGACGGTAACTGCAGCAGTCATGACCCTTAGCAACGATCAACGACAGAAAGTTTTGCCTCTGTCTTGA 1770 46.21 MGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQPQMVVASIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDLSTNRPVPFQQANHIRAPAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQTETSVASSTQDRLQKTDASDEKAAADDRSSANQTDKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTILMAAASPNRLTGPGCSTSSQLPHRQDMSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEHQLNNGTTNSRTETQTHLGQLNNKVTKSSIPPSVKTSPTVTAAVMTLSNDQRQKVLPLS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48293381 48298239 - Maker00003805 Lcy4g2174 631700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2174 589 MobiDBLite consensus disorder prediction 17 32 - -
Lcy4g2174 589 PANTHER TESMIN/TSO1-RELATED 31 518 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy4g2174 589 MobiDBLite consensus disorder prediction 375 448 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 375 401 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 92 119 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 44 77 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 402 417 - -
Lcy4g2174 589 SMART CXC_2 117 157 IPR033467 -
Lcy4g2174 589 SMART CXC_2 202 243 IPR033467 -
Lcy4g2174 589 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 418 432 - -
Lcy4g2174 589 MobiDBLite consensus disorder prediction 1 78 - -
Lcy4g2174 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Lcy4g2174 589 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1571 Lcy-Chr11:39532075 Lcy4g2174 Lcy-Chr4:48293381 3.95E-19 dispersed
Lcy2g0828 Lcy-Chr2:7480306 Lcy4g2174 Lcy-Chr4:48293381 9.68E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20024 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2174 - - - 0.0