Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy4g2175 | ATGGAACCTCCACCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGACATCATCCAGAAGTACCAGATCCTCGAGCGGGTCGGATCCGGAGCATATTCCGATGTCCACCGTGCGCGGCGGATCTCCGATGGCGTCATCGTCGCCTTGAAGGAGATTCATGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCCAATATCGTTGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCGGTGCTTGTTCTCGAGTTTTTGAGAACGGATTTGGCCACCGTTATTGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGGATCCGGGCGGGGGCTCGCGGTCGGTGAGGTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGAATTCTGATGGAGCCTGGATATGATGAATCCAATGAGATCTCACAAACACGGGAGATGAACTCTTCGGATCAAGTACCCGCTTCTCAGCCATCTGCAATTTTTCCAGGAACATTAAGCTCGAATCGAGAAGGTAACAAAACTGAAGAGCAAGAACCAATTAGCAAAGAGGAATATTTTAGAGTTTTAGACGAGATGAAAGCAAAAGATTCACCAAATGAATTTGATAAGGAAACATGTACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACCAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAGGGTTCTCTCACTTCATGTGTCGGTACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCTACGAGCTACGGTTTGGAGATCGATTTGTGGTCATTGGGCTGCATTTTTGCAGAACTTTTTACATTGGAACCCTTGTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTAGGCAATTTGACTGAAGATTGCTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATCATATCATTCAACAACATCGAAAAGCCAATTGGCCTGGAAGCATGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATGATTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGCTACAATACAAGTATTTCACTGAGGAGCCACTTCCTATTCCCATATCTGAGCTTCATGTTCCTACAACCAGAAGTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACAATGAGTCAGATTCCGATATGGACGAACTCGGCCCCATGAATGTTACCACCTGTGCCACTGGTTACTCCATACAATTTGATTGA | 1449 | 46.65 | MEPPPAKSWSIHTRPDIIQKYQILERVGSGAYSDVHRARRISDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFLRTDLATVIAEAKKRGSDGVGSGRGLAVGEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMEPGYDESNEISQTREMNSSDQVPASQPSAIFPGTLSSNREGNKTEEQEPISKEEYFRVLDEMKAKDSPNEFDKETCTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDCWPGCSELPDFQIISFNNIEKPIGLEACLPNCSPDEISMIKRLLCYNPANRATAMELLQYKYFTEEPLPIPISELHVPTTRSGQDEDSPAGWYDYNESDSDMDELGPMNVTTCATGYSIQFD | 482 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 48301058 | 48304288 | - | Maker00003767 | Lcy4g2175 | 631701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy4g2175 | 482 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 111 | - | - | |
| Lcy4g2175 | 482 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2175 | 482 | MobiDBLite | consensus disorder prediction | 184 | 225 | - | - | |
| Lcy4g2175 | 482 | ProSitePatterns | Protein kinases ATP-binding region signature. | 27 | 50 | IPR017441 | GO:0005524(InterPro) | |
| Lcy4g2175 | 482 | PANTHER | CELL DIVISION PROTEIN KINASE | 20 | 423 | IPR050108 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER) | |
| Lcy4g2175 | 482 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 440 | IPR011009 | - | |
| Lcy4g2175 | 482 | ProSiteProfiles | Protein kinase domain profile. | 21 | 423 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2175 | 482 | FunFam | Cyclin-dependent kinase F-1 | 12 | 106 | - | - | |
| Lcy4g2175 | 482 | Pfam | Protein kinase domain | 21 | 177 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2175 | 482 | Pfam | Protein kinase domain | 292 | 423 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2175 | 482 | SMART | serkin_6 | 21 | 423 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy4g2175 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 206 | - | - | |
| Lcy4g2175 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 272 | 430 | - | - | |
| Lcy4g2175 | 482 | MobiDBLite | consensus disorder prediction | 184 | 214 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy4g2175 | Lcy-Chr4:48301058 | Lcy5g2098 | Lcy-Chr5:44056799 | 6.01E-34 | dispersed | |
| Lcy4g2175 | Lcy-Chr4:48301058 | Lcy10g2039 | Lcy-Chr10:44495150 | 1.18E-33 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65886 | None | None | None | None | Lcy | PK |
Pathway information