Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2186 ATGAGGGCGTGGGGCAAATGGGTGTCTGAAATTCGAGAGCCGAAGAAGAAGAGCCGGATCTGGCTCGGCACGTTCGCCACGCCCGACATGGCGGCCCGTGCTCACGATGTTGCCGCTCTCACCATCAAAGGTAACTCGGCCATCCTCAATTTCCCCGAACTCGCCGCCTCATTCCCCCGCCCCGCCTCCTCCTCCCCTCGCGACGTCCAATCCGCCGCCGCCCTGGCCGCCTCAATGCAACTCCCCAACGTCCCTCGTCCGCCACCACCACCGGTGCCACCGTCGTCGCCGCCGTCTCCACCGTCGTCGCCGCCGTTTTCGTCTTCGTCCGAGTTGGACGAATCGACGCCGGAGGAACTGAGTGAGATCGTGGAGCTGCCGAGTTTGGGGACGAGTTACGCGGAATTGACCGAGTCGGTGACCGAGTTCGTGTGTGACGAGTGGCTGTATAGTTATGGGCCATGGTATCAAAATCAAAGCACAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGAACAAATGGGAATGGCGGAAACAGAGTGTGTGATTCCTGCTGCATTTCAACCTTTCTCGTGGTAA 585 58.29 MRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPRPASSSPRDVQSAAALAASMQLPNVPRPPPPPVPPSSPPSPPSSPPFSSSSELDESTPEELSEIVELPSLGTSYAELTESVTEFVCDEWLYSYGPWYQNQSTKEEEEEAYEYFREQMGMAETECVIPAAFQPFSW 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48415335 48415919 + Maker00003839 Lcy4g2186 631712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2186 194 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g2186 194 MobiDBLite consensus disorder prediction 82 105 - -
Lcy4g2186 194 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677(InterPro)
Lcy4g2186 194 MobiDBLite consensus disorder prediction 59 120 - -
Lcy4g2186 194 SMART rav1_2 1 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g2186 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 145 IPR051032 -
Lcy4g2186 194 CDD AP2 1 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g2186 194 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy4g2186 194 Pfam AP2 domain 3 44 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2186 Lcy-Chr4:48415335 Lcy9g1625 Lcy-Chr9:41392249 4.87E-45 dispersed
Lcy12g0669 Lcy-Chr12:8285372 Lcy4g2186 Lcy-Chr4:48415335 2.84E-34 wgd
Lcy2g0853 Lcy-Chr2:7718615 Lcy4g2186 Lcy-Chr4:48415335 1.03E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20025 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2186 K09286 - csv:101212945 250.751