Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2203 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTACTATCCATTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTATTGAACCAGAAAGGATTGAGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGATGGTAAGGAGCTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGCAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAGCTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCACTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTGGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTAGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCCTCCAATCTACTTGTGAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTGGGGACTTACAATTACATGTCGCCTGAGCGAATCAGCGGGGGAACATATGACTACAGCAGTGACATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGGTTGGTAACCTTAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1077 42.62 MKTKTPLKQLKLSVPVQETTIHSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDGKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLVGNLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48603129 48606470 - Maker00003280 Lcy4g2203 631729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2203 358 ProSiteProfiles Protein kinase domain profile. 69 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2203 358 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Lcy4g2203 358 FunFam Mitogen-activated protein kinase kinase 6 150 352 - -
Lcy4g2203 358 Pfam Protein kinase domain 70 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2203 358 SMART serkin_6 69 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2203 358 SUPERFAMILY Protein kinase-like (PK-like) 67 343 IPR011009 -
Lcy4g2203 358 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lcy4g2203 358 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 345 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy4g2203 358 PIRSF ILK 2 332 - -
Lcy4g2203 358 CDD PKc_MAPKK_plant_like 67 337 - -
Lcy4g2203 358 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Lcy4g2203 358 Gene3D Transferase(Phosphotransferase) domain 1 150 347 - -
Lcy4g2203 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0180 Lcy-Chr10:2476269 Lcy4g2203 Lcy-Chr4:48603129 1.92E-75 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy5g2364 Lcy-Chr5:46474646 9.60E-63 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy4g2246 Lcy-Chr4:49025183 2.24E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65888 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2203 K04368 - csv:101218848 675.626