Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2203 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTACTATCCATTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTATTGAACCAGAAAGGATTGAGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGATGGTAAGGAGCTTGATGTCGATTTCTCATTGGAAGATCTAGAGACTGTGAAAGTCATCGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGCAAACTTTTTGCCTTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAGCTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCACTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTTGTCAGACAAGTCAAAACAATTCTTGAACCATATCTGGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTAGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCCTCCAATCTACTTGTGAACCATAAAGGGGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTGGGGACTTACAATTACATGTCGCCTGAGCGAATCAGCGGGGGAACATATGACTACAGCAGTGACATATGGAGCTTGGGCCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTATCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCATCATCATTAGATCTTCTGGTTGGTAACCTTAATCATCCTTTCATCAAGAAATTCGAAGACAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGTAAGTTTTCCTAGATAA 1077 42.62 MKTKTPLKQLKLSVPVQETTIHSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDGKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLVGNLNHPFIKKFEDKDIDLGILVGSLDPPVSFPR 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48603129 48606470 - Maker00003280 Lcy4g2203 631729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2203 358 ProSiteProfiles Protein kinase domain profile. 69 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2203 358 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Lcy4g2203 358 FunFam Mitogen-activated protein kinase kinase 6 150 352 - -
Lcy4g2203 358 Pfam Protein kinase domain 70 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2203 358 SMART serkin_6 69 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2203 358 SUPERFAMILY Protein kinase-like (PK-like) 67 343 IPR011009 -
Lcy4g2203 358 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lcy4g2203 358 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 345 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy4g2203 358 PIRSF ILK 2 332 - -
Lcy4g2203 358 CDD PKc_MAPKK_plant_like 67 337 - -
Lcy4g2203 358 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Lcy4g2203 358 Gene3D Transferase(Phosphotransferase) domain 1 150 347 - -
Lcy4g2203 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2203 K04368 - - csv:101218848 675.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0180 Lcy-Chr10:2476269 Lcy4g2203 Lcy-Chr4:48603129 1.92E-75 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy5g2364 Lcy-Chr5:46474646 9.60E-63 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy4g2246 Lcy-Chr4:49025183 2.24E-128 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0940 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.2 6.7e-136 481.1
Lcy4g2246 . 42 339 MAP Kinase Kinase Gene Family AT4G26070 65.9 5.7e-111 398.3
Lcy4g2203 . 26 355 MAP Kinase Kinase Gene Family AT4G26070 55.6 1.5e-106 383.6
Lcy2g0940 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.6e-134 476.5
Lcy4g2246 . 16 339 MAP Kinase Kinase Gene Family AT4G29810 61.5 9.7e-111 397.5
Lcy4g2203 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 59.5 2.8e-110 396.0
Lcy10g0180 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT1G51660 68.5 8.8e-126 447.6
Lcy5g2364 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.9 1.9e-83 307.0
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT3G21220 67.4 7.6e-127 451.1
Lcy5g2364 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 7.2e-85 311.6
Lcy4g2203 . 1 359 MAP Kinase Kinase Gene Family AT5G56580 83.3 3.3e-170 595.1
Lcy2g0940 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 60.2 2.4e-120 429.5
Lcy4g2246 . 16 323 MAP Kinase Kinase Gene Family AT5G56580 56.5 1.9e-96 350.1
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.7 2.0e-107 386.3
Lcy13g0089 . 78 341 MAP Kinase Kinase Gene Family AT1G18350 52.8 8.3e-77 284.6
Lcy5g2364 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 1.7e-79 293.5
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.0e-114 410.6
Lcy13g0089 . 82 341 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65888 None None None None Lcy PK