Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2205 ATGTCGTGGCAAACGTATGTTGATGACCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGGTTCCGATCATCCTCCTTCTCGCTTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAGCCGGGTCATCTTGCACCTACTGGACTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGTTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGCATCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGACTACCTCGTCGATCAGGGTCTGTAG 426 50.94 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQVPIILLLAFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48671109 48673213 - Maker00003353 Lcy4g2205 631731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2205 141 CDD PROF 2 140 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 Pfam Profilin 1 140 IPR048278 GO:0003779(InterPro)
Lcy4g2205 141 SUPERFAMILY Profilin (actin-binding protein) 2 140 IPR036140 -
Lcy4g2205 141 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Lcy4g2205 141 PANTHER PROFILIN 1 140 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Lcy4g2205 141 PRINTS Profilin signature 50 70 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Profilin signature 110 123 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Profilin signature 123 140 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Profilin signature 74 88 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 FunFam Profilin 1 141 - -
Lcy4g2205 141 Gene3D Dynein light chain 2a, cytoplasmic 1 141 - -
Lcy4g2205 141 PRINTS Plant profilin signature 114 127 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Plant profilin signature 127 140 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 PRINTS Plant profilin signature 94 109 IPR005455 GO:0003779(InterPro)
Lcy4g2205 141 SMART prof_2 1 141 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0682 Lcy-Chr12:8502907 Lcy4g2205 Lcy-Chr4:48671109 5.05E-70 dispersed
Lcy4g2205 Lcy-Chr4:48671109 Lcy9g1637 Lcy-Chr9:41526861 2.45E-63 dispersed
Lcy4g2204 Lcy-Chr4:48666256 Lcy4g2205 Lcy-Chr4:48671109 7.56E-78 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2205 K05759 - csv:101219322 253.062