Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2209 ATGAAGATCGTGGAATTGGAAGATGCTGGGTCTGATCGGGATGAAGAAATCGGCAGTGGTCAGATTGTGAAGGTCGATGCTAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTATCCTACCCTTTTGTATAACGTGCTTCGGAATAAAATGGAAGCTGAATTCAGATGGTGGGATGAAGTCGATCAGTTTCTGTTGCTGGGTGCAGTGCCTTTCCCCAAAGACGTGCCGAGATTGAAGAAGCTTGGTGTTGGCGGCGTTATCACTCTCAATGAACCTTATGAAACACTAGTTCCATCTTCCTTATATTATCGCCATGGAATTGACCACTTAAAGATCCCCACGAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTAGCAGAGCTGTGGACTTTATTCACAGAAATGCATCTTCTGGTAAAACAACATACGTCCATTGTAAAGCAGGACGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCTGCCCTAGAATACGTGCGCTCTAGAAGGCCACGAGTGTTGCTCGCCCCTTCGCAGTGGGAGGCTGTTCAAGAATACAGCAACCGTCGACCAGTTACAAGTTCAAGCTCACCCTCAGGAGGAGATGCAGTGCTCATTACAAAAGACGATCTAGAAGGATACCACGGTACATGCATCGACAGTGCGGGTAGAGAACTTGCAGTCTTCCCTAGGATGGGTAAGTCAAAGCCGATGATAGCAAGGTTGTCATGCCTATTTTCCTCTTTGATAGTTCATGGCAGTAGTGGATCTCTCATTAAGCGTCTGCCCGTGTCGGAGGCTCGTGCTTGTTGA 855 46.78 MKIVELEDAGSDRDEEIGSGQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEVDQFLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNASSGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVTSSSSPSGGDAVLITKDDLEGYHGTCIDSAGRELAVFPRMGKSKPMIARLSCLFSSLIVHGSSGSLIKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48730756 48734130 + Maker00003657 Lcy4g2209 631735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2209 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Lcy4g2209 284 FunFam Dual specificity phosphatase domain protein 59 206 - -
Lcy4g2209 284 CDD PTPMT1 59 203 IPR044596 GO:0004721(InterPro)
Lcy4g2209 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311(InterPro)
Lcy4g2209 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 2 256 - -
Lcy4g2209 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Lcy4g2209 284 Pfam Dual specificity phosphatase, catalytic domain 99 202 IPR000340 GO:0016311(InterPro)
Lcy4g2209 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470(InterPro)
Lcy4g2209 284 SMART dsp_5 62 203 IPR020422 GO:0006470(InterPro)
Lcy4g2209 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2209 Lcy-Chr4:48730756 Lcy6g2129 Lcy-Chr6:45037070 2.16E-81 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2209 - - - 0.0