Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2216 ATGATGATCGGCGAGCAACCCAACCGCTCGAATCCGACGGTTATCATTCCTCCGTGGACGTTTATGGATGATCCGGCGTCGGATTTGTACAGTCATTCGCCGGGGAGCGGCGGGAGCAGCGGCAGCGTCAAGTGCGATGGATGTTCCAGCGGAGGTGGATACTCTTCGTATAGAATGCAGGATGCAATGGCGATGCTGCACCGGTATGTACCGTTGATGGACCCGCCGTTGATGGAGCCGGAGATGGACTCGGATTTCGATGTTTCAGGTCAGGAGCCGGATTCTCCGGTGGATACGTACTCCTCTGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGAAGATCGCACGACTGGACTGAGTGTCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCAAGGAGGTTTTACTATTCCGGTACGGCGTGTGCGGATTTTCGGAAGGGAAGCTGTAAGAAAGGAGACGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTATCGGACTCAGCCATGCAAGGATGGAACGAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAGCAGAGTCCTAAAAGTACGAACTCCATCCCTTCGTACGACGGATCGCCTCTCCGACAAGCGATTGAAGCCTGTGCGAAACAGATGCCCTTTTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCACGAATCGAGTCTCCGCCACAATCGCCGATGATTAAATCACGAAATCGACCACGCGCAACAAGTCCGATCAACGAAATGGTAGCGTCACTACGAAATTTACAGCTCAGTAAGGTGCAATCTCCATCTTCCTTGTGGAATGTTCAAGTCGGATCTCCAGTATTCGGATCTCCAAAGGAATCCACTCCCCGATCCGGTTTCTGTAGCCTTCCAGACACTCCGACTCGTCCATTTCTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGAGAGGAGCCGGCGATGGAGCGAGTGGAGTCCGGGAGAAATCTACGAGCAAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCATGAAAAATACAACGGCGGAAGCGGCGGCGGAGGTCTGGACGTCGATTGGATCTCCGAGCTACTCAAGTAA 1191 53.15 MMIGEQPNRSNPTVIIPPWTFMDDPASDLYSHSPGSGGSSGSVKCDGCSSGGGYSSYRMQDAMAMLHRYVPLMDPPLMEPEMDSDFDVSGQEPDSPVDTYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRFYYSGTACADFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPKSTNSIPSYDGSPLRQAIEACAKQMPFLSSPGTSPPVSPRIESPPQSPMIKSRNRPRATSPINEMVASLRNLQLSKVQSPSSLWNVQVGSPVFGSPKESTPRSGFCSLPDTPTRPFLRYLDFWDLGCGEEPAMERVESGRNLRAKMLEKLRKENSVGCGDHEKYNGGSGGGGLDVDWISELLK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48809440 48810630 + Maker00003784 Lcy4g2216 631742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2216 396 ProSiteProfiles Zinc finger C3H1-type profile. 144 171 IPR000571 GO:0046872(InterPro)
Lcy4g2216 396 Gene3D - 145 208 - -
Lcy4g2216 396 SMART c3hfinal6 179 202 IPR000571 GO:0046872(InterPro)
Lcy4g2216 396 SMART c3hfinal6 144 170 IPR000571 GO:0046872(InterPro)
Lcy4g2216 396 PANTHER UNKEMPT FAMILY MEMBER 53 396 IPR045234 -
Lcy4g2216 396 FunFam Zinc finger CCCH domain-containing protein 66 102 170 - -
Lcy4g2216 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 169 IPR000571 GO:0046872(InterPro)
Lcy4g2216 396 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2165 Lcy-Chr13:40596457 Lcy4g2216 Lcy-Chr4:48809440 2.85E-75 dispersed
Lcy4g2216 Lcy-Chr4:48809440 Lcy9g1994 Lcy-Chr9:44798174 1.09E-109 dispersed
Lcy4g2216 Lcy-Chr4:48809440 Lcy2g0889 Lcy-Chr2:8141815 1.41E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20027 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2216 - - - 0.0