Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2245 ATGACCTCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGTGGCGGAAGCCGCCGCGCCGTCAGATGGGCCGTCGAGAATCTCTTGCCAACCGCCGATCGTTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATTCCCACCCCAATGGGGGATCGCGTCGCTGTCTCGGAACTCGATGCAGATGTTGTAGCACTTTATGTGCACGATGTGAAAGAGAAATATGAACAAGTTTTTGTCCCTTTCAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCTACTGCACTTTTGAGATATGCATCTGAATCTGGGATTAAACGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGCTAAAAGGGGATTCAGTACCCTCTGCTGTTCTGAGAACTGCTCCTAGTTCTCTTGATATTTATGTTATATATAGGAGAAGAGTCGTTACAAGAATGGCTAGTACTGCTCTATCTACTGAAACCGATTCGAGGCAGTGGATGCTTGGTGATACTGATTACTACAGGGGTTCAAGTGCCGTTAGTGAAAAATCATCTGGAACTTTTTCTTCTTCTTCCTTGTCGATTGTTCATCGAAGGGGCGATAGCCTCGAAGTTACTTCTACTGAGCAACCGAACTCTTTGAGTACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCACTGCAACTAGAATTAGAAACCACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAGAGTAAATGCTGCCTTGGAAAGGGAAGAAACTTTTAGGAAACTTGCTGCTGAAGAAAAAGAAAAGCACTTGGAAGCTATTAAGGAGCTTGAGGAGGCAAAAGACTTGCTGGCTAAAGAAGCTTATGAAAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAATCCTTGGAGAAGCAGAAAATTGTTGACACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACTACGGCCGAAATCGAAACTGCGACGAATTTCTTCGATGAAGTTAATGTGATCGGCGAGGGAGGATATGGGAAAGTCTACAAATGCAGCCTCGATCATACCCCTGTGGCGATTAAGGTTTTTCAACACGACATATTCGAGAAAAAGGATGAGTTTCTGAAAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACACGTGGTTTTACTGCTCGGAGCTTGTCCCGAGCGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCACATCTTGCTCCGGAATGGAAAAACTCCCCTTCCTTGGTCTATTAGATTTAGAATAATTTTTCAAGTAGCTTCTGGACTTGCATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATAGAGATCTAAAACCAGGTAATATCTTACTAGACAGAAACTATGTAAGCAAGATCTCTGATGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCCGACAATGTCACGGAGTACAGAAACACCATTCTTGCTGGTACCTTACATTACATGGATCCTGAATATCAGAGAACTGGCACCCTCCGACCAAAGTCAGATACATATGCACTTGGAGTAACAATGCTCCAGTTGTTGACAGGGCGCCAGCCACATGGTCTTCTTCTGGCTGTCGAGAATTCCGTCGCAAGCGCCTCCCTTGCAGATATTCTAGATAAGTCAATTACTGACTGGCCTCTAGCCGAAGCAGAAGAACTAGCTCGACTTGCACTGAAATGCATGAAACTTAGATGCAGGGATAGGCCAGATCTTGAAACTGAAGTTCTTCCTGTCCTTAAAAGGCTTGTTGATTTTGCAGATACTTGTCAAAATGAAGAAAAAGGGTCTGCCAATCCTCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAATAATGGAGGATCCTTATATAGCAGCGGACGGGTTTAGTTACGAGTATATAGCGATTAAAGCATGGCTCGAGGAACATGACATATCGCCCGTGACAAAGCTTAAGCTTCTGCATTCCATGTTTATTCCAAATCACACTTTGCGTTCTGCCATACAAGAGTGGAGATCAAGAGTGACATTTCCATCTTCCTAA 2190 43.93 MTSVAVAVNGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDRVAVSELDADVVALYVHDVKEKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASESGIKRLVLGSCFRTCIARKLKGDSVPSAVLRTAPSSLDIYVIYRRRVVTRMASTALSTETDSRQWMLGDTDYYRGSSAVSEKSSGTFSSSSLSIVHRRGDSLEVTSTEQPNSLSTLTEEEDMRAEVESLQLELETTVSLYKQACEELVHAQKKVQSLTSECLEESRRVNAALEREETFRKLAAEEKEKHLEAIKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVDTLLTNDRRYRRYTTAEIETATNFFDEVNVIGEGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKTPLPWSIRFRIIFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTMLQLLTGRQPHGLLLAVENSVASASLADILDKSITDWPLAEAEELARLALKCMKLRCRDRPDLETEVLPVLKRLVDFADTCQNEEKGSANPPSHYFCPILQEIMEDPYIAADGFSYEYIAIKAWLEEHDISPVTKLKLLHSMFIPNHTLRSAIQEWRSRVTFPSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49020170 49025145 + Maker00003573 Lcy4g2245 631771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2245 729 Pfam U-box domain 656 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy4g2245 729 PANTHER OS02G0152300 PROTEIN 4 718 IPR051348 -
Lcy4g2245 729 Pfam Protein tyrosine and serine/threonine kinase 376 628 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2245 729 Gene3D HUPs 2 158 IPR014729 -
Lcy4g2245 729 Pfam Universal stress protein family 19 155 IPR006016 -
Lcy4g2245 729 Coils Coil 298 347 - -
Lcy4g2245 729 Coils Coil 259 279 - -
Lcy4g2245 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy4g2245 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Lcy4g2245 729 Gene3D Transferase(Phosphotransferase) domain 1 445 654 - -
Lcy4g2245 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 725 IPR013083 -
Lcy4g2245 729 FunFam Os07g0541700 protein 445 535 - -
Lcy4g2245 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2245 729 CDD STK_N 3 161 - -
Lcy4g2245 729 Gene3D Phosphorylase Kinase; domain 1 351 444 - -
Lcy4g2245 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Lcy4g2245 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 155 - -
Lcy4g2245 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2245 729 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 344 444 - -
Lcy4g2245 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Lcy4g2245 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy4g2245 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2245 729 SUPERFAMILY RING/U-box 646 723 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1430 Lcy-Chr12:32486702 Lcy4g2245 Lcy-Chr4:49020170 3.46E-133 dispersed
Lcy4g2245 Lcy-Chr4:49020170 Lcy9g1759 Lcy-Chr9:42784375 5.83E-133 dispersed
Lcy3g2227 Lcy-Chr3:49084957 Lcy4g2245 Lcy-Chr4:49020170 9.34E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65889 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2245 - - - 0.0