Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2246 TTCAGTACGACCCTCAGCCCGAGGGAAATAATAAGCCCGCCATTGATGAAGAAGGACAGCTCCATGAATCTTAACTTGAAGCTCGTTCTACCTCCTCCCGACGAAGTTTCCTTCGCCTTCATAACCCAAGGCGGTACTTTCACCGATGGCGATTTGCTCGTGAATAGAGACGGCGTGCGGATTGTTTCTCAAGCGGAGGACGAAAGTCCTCCACCGATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGAAAAGGAAATGGCGGAATAGTTCAATTAGTCCGGCATAAATGGACGAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAAGCTGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTACATTGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAGTACATGGACGGTGGCTCACTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAGCCTTATCTTGCAGCCATTTGTTACCAGGTACTCCAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTAATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCAAGCAAATACTTTTGTTGGCACTTACGCTTACATGTCTCCTGAGAGAATCAGTGGGGAAAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTAGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGATGGGAAGGCTTCTTTGATGTTATGATAGCTGTAGTAGAATTAGCATCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGGTATACAAGCTTTCATCCTACAGAAAGACCCGCAGAAGAGAAGCTCTGCACGCGAACTTCTGGTATAATCGATCCTTCTGCTGTTCTTTATTGCCAGTGGTTCAATTACAACAAGTGCATCCTTTCATCAAAAAGTTCGAACACTTCGACGTTGATCTTGCAGCTTACTTCAAAGACGCTGGCTCTCCATTGGCAACCTTCTAATTTTACATGGAACAGGAGCCAAGCACAGACACTTTTGACATCTTACTTAATTACCTCAATGTCTTTGGTGTGGCATCGACTTGCACGTTGCAAGCAATTATCATATTTGATGGGAGGAAATAGCCAAGATCAATCTTCACTGGTGAAATTCAAGAAGCCAATTCATTTGTTGGAGTAA 1353 41.69 FSTTLSPREIISPPLMKKDSSMNLNLKLVLPPPDEVSFAFITQGGTFTDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCKLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLQGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDQANTFVGTYAYMSPERISGEKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMIAVVELASPSAPEQFSPEFCSFISSWYTSFHPTERPAEEKLCTRTSGIIDPSAVLYCQWFNYNKCILSSKSSNTSTLILQLTSKTLALHWQPSNFTWNRSQAQTLLTSYLITSMSLVWHRLARCKQLSYLMGGNSQDQSSLVKFKKPIHLLE 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49025183 49028291 - Maker00003729 Lcy4g2246 631772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2246 450 SUPERFAMILY Protein kinase-like (PK-like) 86 395 IPR011009 -
Lcy4g2246 450 Gene3D Phosphorylase Kinase; domain 1 63 164 - -
Lcy4g2246 450 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 58 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy4g2246 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2246 450 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2246 450 Gene3D Transferase(Phosphotransferase) domain 1 165 370 - -
Lcy4g2246 450 FunFam Mitogen-activated protein kinase kinase 1 66 164 - -
Lcy4g2246 450 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Lcy4g2246 450 ProSiteProfiles Protein kinase domain profile. 85 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2246 450 CDD PKc_MAPKK_plant_like 83 339 - -
Lcy4g2246 450 SMART serkin_6 85 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0940 Lcy-Chr2:8698502 Lcy4g2246 Lcy-Chr4:49025183 3.01E-165 dispersed
Lcy4g2246 Lcy-Chr4:49025183 Lcy9g1314 Lcy-Chr9:37904579 5.61E-37 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy4g2246 Lcy-Chr4:49025183 2.24E-128 transposed
Lcy5g2364 Lcy-Chr5:46474646 Lcy4g2246 Lcy-Chr4:49025183 9.43E-65 transposed
Lcy2g0938 Lcy-Chr2:8673721 Lcy4g2246 Lcy-Chr4:49025183 4.34E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65890 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2246 K20603 - csv:101206374 587.03