Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2246 TTCAGTACGACCCTCAGCCCGAGGGAAATAATAAGCCCGCCATTGATGAAGAAGGACAGCTCCATGAATCTTAACTTGAAGCTCGTTCTACCTCCTCCCGACGAAGTTTCCTTCGCCTTCATAACCCAAGGCGGTACTTTCACCGATGGCGATTTGCTCGTGAATAGAGACGGCGTGCGGATTGTTTCTCAAGCGGAGGACGAAAGTCCTCCACCGATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGATTCAATAAAAGTCATTGGAAAAGGAAATGGCGGAATAGTTCAATTAGTCCGGCATAAATGGACGAACCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAAGCTGGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTACATTGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAGTACATGGACGGTGGCTCACTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAGCCTTATCTTGCAGCCATTTGTTACCAGGTACTCCAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCTAATTTGTTAATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCAAGCAAATACTTTTGTTGGCACTTACGCTTACATGTCTCCTGAGAGAATCAGTGGGGAAAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTGCTAGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGATGGGAAGGCTTCTTTGATGTTATGATAGCTGTAGTAGAATTAGCATCGCCTTCTGCACCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGGTATACAAGCTTTCATCCTACAGAAAGACCCGCAGAAGAGAAGCTCTGCACGCGAACTTCTGGTATAATCGATCCTTCTGCTGTTCTTTATTGCCAGTGGTTCAATTACAACAAGTGCATCCTTTCATCAAAAAGTTCGAACACTTCGACGTTGATCTTGCAGCTTACTTCAAAGACGCTGGCTCTCCATTGGCAACCTTCTAATTTTACATGGAACAGGAGCCAAGCACAGACACTTTTGACATCTTACTTAATTACCTCAATGTCTTTGGTGTGGCATCGACTTGCACGTTGCAAGCAATTATCATATTTGATGGGAGGAAATAGCCAAGATCAATCTTCACTGGTGAAATTCAAGAAGCCAATTCATTTGTTGGAGTAA 1353 41.69 FSTTLSPREIISPPLMKKDSSMNLNLKLVLPPPDEVSFAFITQGGTFTDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNAEESYCKLVAKELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLQGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDQANTFVGTYAYMSPERISGEKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMIAVVELASPSAPEQFSPEFCSFISSWYTSFHPTERPAEEKLCTRTSGIIDPSAVLYCQWFNYNKCILSSKSSNTSTLILQLTSKTLALHWQPSNFTWNRSQAQTLLTSYLITSMSLVWHRLARCKQLSYLMGGNSQDQSSLVKFKKPIHLLE 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49025183 49028291 - Maker00003729 Lcy4g2246 631772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2246 450 SUPERFAMILY Protein kinase-like (PK-like) 86 395 IPR011009 -
Lcy4g2246 450 Gene3D Phosphorylase Kinase; domain 1 63 164 - -
Lcy4g2246 450 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 58 341 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy4g2246 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2246 450 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2246 450 Gene3D Transferase(Phosphotransferase) domain 1 165 370 - -
Lcy4g2246 450 FunFam Mitogen-activated protein kinase kinase 1 66 164 - -
Lcy4g2246 450 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Lcy4g2246 450 ProSiteProfiles Protein kinase domain profile. 85 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2246 450 CDD PKc_MAPKK_plant_like 83 339 - -
Lcy4g2246 450 SMART serkin_6 85 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2246 K20603 - - csv:101206374 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0940 Lcy-Chr2:8698502 Lcy4g2246 Lcy-Chr4:49025183 3.01E-165 dispersed
Lcy4g2246 Lcy-Chr4:49025183 Lcy9g1314 Lcy-Chr9:37904579 5.61E-37 dispersed
Lcy4g2203 Lcy-Chr4:48603129 Lcy4g2246 Lcy-Chr4:49025183 2.24E-128 transposed
Lcy5g2364 Lcy-Chr5:46474646 Lcy4g2246 Lcy-Chr4:49025183 9.43E-65 transposed
Lcy2g0938 Lcy-Chr2:8673721 Lcy4g2246 Lcy-Chr4:49025183 4.34E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0940 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.2 6.7e-136 481.1
Lcy4g2246 . 42 339 MAP Kinase Kinase Gene Family AT4G26070 65.9 5.7e-111 398.3
Lcy4g2203 . 26 355 MAP Kinase Kinase Gene Family AT4G26070 55.6 1.5e-106 383.6
Lcy2g0940 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.6e-134 476.5
Lcy4g2246 . 16 339 MAP Kinase Kinase Gene Family AT4G29810 61.5 9.7e-111 397.5
Lcy4g2203 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 59.5 2.8e-110 396.0
Lcy10g0180 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT1G51660 68.5 8.8e-126 447.6
Lcy5g2364 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.9 1.9e-83 307.0
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT3G21220 67.4 7.6e-127 451.1
Lcy5g2364 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 7.2e-85 311.6
Lcy4g2203 . 1 359 MAP Kinase Kinase Gene Family AT5G56580 83.3 3.3e-170 595.1
Lcy2g0940 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 60.2 2.4e-120 429.5
Lcy4g2246 . 16 323 MAP Kinase Kinase Gene Family AT5G56580 56.5 1.9e-96 350.1
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.7 2.0e-107 386.3
Lcy13g0089 . 78 341 MAP Kinase Kinase Gene Family AT1G18350 52.8 8.3e-77 284.6
Lcy5g2364 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 1.7e-79 293.5
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.0e-114 410.6
Lcy13g0089 . 82 341 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65890 None None None None Lcy PK