Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2251 ATGTTGCCCTGTGATCCATCGGTCAGAGCAACAAATAGCTTTGACTTGGCGGCACTTCTCGCCATAAAATCAAATTTAAAAATCGATTTAAATCCGCCAGCCAAACAGCACGTGCCACGTCTGTGGATGTTGAAGAAATCCCCGGTCACGCTAGTGCATGCTGAAAAAGCGGGTTCTGGATTCCGGCAACACATGGATGGAGGAGCAGCTTACAATCCTCGGACGGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGCCGCGCCGGAATGATTAGAGCTCTCACCACCGGTCTTGTTCAATCTCTATGTCGAAGAATTTTATCAGCAGTGCGACCCTGGTCTGAGCTCCCTTCTCTGTATTCTTCCCTCTTTTACATAACTTCTTTTCAACTATTTACACAACTGTTACAAATTTCAGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCGGAACCAGCACTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCACAGTGACGCATGGCTGCTTGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCTGACAGGAAACGCCTTTTTACGATGATAAATGATCTACCCACGATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGAAGAGGATGAGGGACTGGATGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGAGCACGGCCCTGA 1044 46.74 MLPCDPSVRATNSFDLAALLAIKSNLKIDLNPPAKQHVPRLWMLKKSPVTLVHAEKAGSGFRQHMDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTGLVQSLCRRILSAVRPWSELPSLYSSLFYITSFQLFTQLLQISEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKTGSKGRGSESSKLSKGLAKEEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49057523 49061315 - Maker00003334 Lcy4g2251 631777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2251 347 Pfam PHD-finger 294 340 IPR019787 -
Lcy4g2251 347 FunFam PHD finger alfin-like protein 286 342 - -
Lcy4g2251 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 342 IPR013083 -
Lcy4g2251 347 Pfam Alfin 139 234 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy4g2251 347 MobiDBLite consensus disorder prediction 242 287 - -
Lcy4g2251 347 MobiDBLite consensus disorder prediction 242 266 - -
Lcy4g2251 347 ProSiteProfiles Zinc finger PHD-type profile. 291 343 IPR019787 -
Lcy4g2251 347 SUPERFAMILY FYVE/PHD zinc finger 283 344 IPR011011 -
Lcy4g2251 347 CDD PHD_AL_plant 293 343 IPR044104 -
Lcy4g2251 347 PANTHER CPG BINDING PROTEIN 71 346 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy4g2251 347 SMART PHD_3 293 341 IPR001965 -
Lcy4g2251 347 ProSitePatterns Zinc finger PHD-type signature. 294 340 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2209 Lcy-Chr13:40977467 Lcy4g2251 Lcy-Chr4:49057523 5.57E-115 dispersed
Lcy13g2215 Lcy-Chr13:41017907 Lcy4g2251 Lcy-Chr4:49057523 1.66E-144 dispersed
Lcy4g2251 Lcy-Chr4:49057523 Lcy6g1123 Lcy-Chr6:12809765 9.64E-97 dispersed
Lcy3g2232 Lcy-Chr3:49163114 Lcy4g2251 Lcy-Chr4:49057523 2.86E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20031 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2251 K26274 - rcu:8272513 382.874