Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2255 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGCAACGCGCAGGAGAGATATAGCCTCTTGATCTCCGATGCCGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTCATCCAGTTGATCGATTACGTTTGCAGTCCCATCAAGGGCCGCAAGCCTGTACACAAGTGGTTTAGTGCGGATAGATTGCTGTTCTCTTCTTCTGGTCTTGTTAAAATCTGTGTGTATGAACACATCACAGAGGAAAGGTCTGTGTACAAGTGGTTTAGAGTTGATAGATTGTTGCTCTCTCCTTTTGTTCTTGTTGAAACTGTGTTACGAGCACATCATGGGAAAGTAAGGATTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACTGTGAGATAATTGGGAATCCAAAATCATCCGCTCAATCAGAATCTTTTGCACCGAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATGGTCTTCTGAGTTCCAGAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATAATTAAGAACGAGGCACCAGCTCGTATAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCTAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCGGATGGAGGAGAGATACGTGTAACCTGCTTCAATGCTGTTGTTGATCGCTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGTAGCCTAAAACCTGCTCGAAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCTTCTTCCACTGTGGAACTCTGTCCAGATGAAGATAATACCATTCCAAGACAGCAGTTTTCTTTCAGACCTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCCATCAATCCATCAATTCCTGTGTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATTCATCTGGCAGGAGTGTTGAGCTGACACTGTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAACTGCAAGAAATCATTAACTCGGGTCTCTCTCCAGTCTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCGACTCAGCTTTTCATAAATCCAGATCTTCCTGAGGCTCACATCTTGAGAGACTGGTACGATGGTGGGGGAAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGCCAGGAGCAGCCAAGAACGAGATTCGGAAAACTGTGTCTCAGATTAAAGACGAAGGTCTTGGCAGATCTGATAAACCAGATTGGATTACCGTGAAAGCAACAATATCATTCATCAAAACCGATTCCTTCTGCTACACAGCATGTCCACTAATGATTGGAGATCGACAGTGCAACAAGAAGGTGAACAGATCAGGAAACTCAAAGTGGCTATGTGGCAGGTGCAATCAAGAATTTGAAGATTGCGATTACAGATATCTTCTTCAAGCCCAAATCCAAGACCATACCGGATTGACATGGGTGACAGCCTTCCAGGAATCTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAGGATGATGTCAAGTTCGGTGAAATACTCAGAAGTAAAATTTTCGATCAATTTCTGTTTAAGCTCAAAATTAAAGAGGAGATGTATGGGGATGAACAGAGGGTGAAAAATACGGTAGTCAAGGCAGATAGGGTAAACCATTCTTCCGAAAGCAAATATATGTTGGATTTGCTTTCAAAATTTTCGAGGTTGAATGCCGTGGAGGCCTTTGGGCACATCGAGAAGACAAAGCAAAAGTGGTCTAGATTTGTGGGAAAACCAAATGATTTTTGA 2139 42.45 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKGRKPVHKWFSADRLLFSSSGLVKICVYEHITEERSVYKWFRVDRLLLSPFVLVETVLRAHHGKVRIIVVLSLETIILDCEIIGNPKSSAQSESFAPKAMPSGNLEQPAKVGNGLLSSRNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDNTIPRQQFSFRPISEIESAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDSSGRSVELTLWGDFCNKEGQKLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILRDWYDGGGKNTTSLSISKEIMPGAAKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVNRSGNSKWLCGRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQESGEEILGVSAKELYMLKYEEQDDVKFGEILRSKIFDQFLFKLKIKEEMYGDEQRVKNTVVKADRVNHSSESKYMLDLLSKFSRLNAVEAFGHIEKTKQKWSRFVGKPNDF 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49083464 49087603 - Maker00003504 Lcy4g2255 631781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2255 712 CDD RPA1_DBD_C 509 682 IPR047192 -
Lcy4g2255 712 Gene3D - 239 349 IPR012340 -
Lcy4g2255 712 FunFam Replication protein A subunit 352 490 - -
Lcy4g2255 712 CDD RPA1_DBD_B 374 481 - -
Lcy4g2255 712 SUPERFAMILY Nucleic acid-binding proteins 1 87 IPR012340 -
Lcy4g2255 712 CDD RPA1N 9 87 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lcy4g2255 712 Gene3D - 493 684 IPR012340 -
Lcy4g2255 712 NCBIfam replication factor-a protein 1 (rpa1) 147 682 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lcy4g2255 712 SUPERFAMILY Nucleic acid-binding proteins 357 487 IPR012340 -
Lcy4g2255 712 Pfam OB-fold nucleic acid binding domain 255 325 IPR004365 GO:0003676(InterPro)
Lcy4g2255 712 FunFam Replication protein A subunit 491 683 - -
Lcy4g2255 712 SUPERFAMILY Nucleic acid-binding proteins 506 683 IPR012340 -
Lcy4g2255 712 CDD RPA1_DBD_A 242 345 - -
Lcy4g2255 712 Pfam Replication factor-A protein 1, N-terminal domain 5 87 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lcy4g2255 712 SUPERFAMILY Nucleic acid-binding proteins 239 352 IPR012340 -
Lcy4g2255 712 Gene3D - 3 173 IPR012340 -
Lcy4g2255 712 PANTHER REPLICATION FACTOR A 1, RFA1 241 675 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lcy4g2255 712 Gene3D - 352 492 IPR012340 -
Lcy4g2255 712 Pfam Replication factor-A C terminal domain 525 676 IPR013955 -
Lcy4g2255 712 Pfam Replication protein A OB domain 363 467 IPR031657 -
Lcy4g2255 712 FunFam Replication protein A subunit 239 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2255 Lcy-Chr4:49083464 Lcy6g2277 Lcy-Chr6:47469955 1.20E-246 dispersed
Lcy4g2255 Lcy-Chr4:49083464 Lcy8g0888 Lcy-Chr8:32006151 3.36E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2255 K07466 - csv:101207583 1021.92