Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy4g2255 | ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGCAACGCGCAGGAGAGATATAGCCTCTTGATCTCCGATGCCGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTCATCCAGTTGATCGATTACGTTTGCAGTCCCATCAAGGGCCGCAAGCCTGTACACAAGTGGTTTAGTGCGGATAGATTGCTGTTCTCTTCTTCTGGTCTTGTTAAAATCTGTGTGTATGAACACATCACAGAGGAAAGGTCTGTGTACAAGTGGTTTAGAGTTGATAGATTGTTGCTCTCTCCTTTTGTTCTTGTTGAAACTGTGTTACGAGCACATCATGGGAAAGTAAGGATTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACTGTGAGATAATTGGGAATCCAAAATCATCCGCTCAATCAGAATCTTTTGCACCGAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATGGTCTTCTGAGTTCCAGAAATCCAGTTCATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATAATTAAGAACGAGGCACCAGCTCGTATAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCTAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGAGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCGGATGGAGGAGAGATACGTGTAACCTGCTTCAATGCTGTTGTTGATCGCTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACTTGATTTCTAAAGGTAGCCTAAAACCTGCTCGAAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCTTCTTCCACTGTGGAACTCTGTCCAGATGAAGATAATACCATTCCAAGACAGCAGTTTTCTTTCAGACCTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCCATCAATCCATCAATTCCTGTGTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATTCATCTGGCAGGAGTGTTGAGCTGACACTGTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAACTGCAAGAAATCATTAACTCGGGTCTCTCTCCAGTCTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCGACTCAGCTTTTCATAAATCCAGATCTTCCTGAGGCTCACATCTTGAGAGACTGGTACGATGGTGGGGGAAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGCCAGGAGCAGCCAAGAACGAGATTCGGAAAACTGTGTCTCAGATTAAAGACGAAGGTCTTGGCAGATCTGATAAACCAGATTGGATTACCGTGAAAGCAACAATATCATTCATCAAAACCGATTCCTTCTGCTACACAGCATGTCCACTAATGATTGGAGATCGACAGTGCAACAAGAAGGTGAACAGATCAGGAAACTCAAAGTGGCTATGTGGCAGGTGCAATCAAGAATTTGAAGATTGCGATTACAGATATCTTCTTCAAGCCCAAATCCAAGACCATACCGGATTGACATGGGTGACAGCCTTCCAGGAATCTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAGGATGATGTCAAGTTCGGTGAAATACTCAGAAGTAAAATTTTCGATCAATTTCTGTTTAAGCTCAAAATTAAAGAGGAGATGTATGGGGATGAACAGAGGGTGAAAAATACGGTAGTCAAGGCAGATAGGGTAAACCATTCTTCCGAAAGCAAATATATGTTGGATTTGCTTTCAAAATTTTCGAGGTTGAATGCCGTGGAGGCCTTTGGGCACATCGAGAAGACAAAGCAAAAGTGGTCTAGATTTGTGGGAAAACCAAATGATTTTTGA | 2139 | 42.45 | MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKGRKPVHKWFSADRLLFSSSGLVKICVYEHITEERSVYKWFRVDRLLLSPFVLVETVLRAHHGKVRIIVVLSLETIILDCEIIGNPKSSAQSESFAPKAMPSGNLEQPAKVGNGLLSSRNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDNTIPRQQFSFRPISEIESAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDSSGRSVELTLWGDFCNKEGQKLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILRDWYDGGGKNTTSLSISKEIMPGAAKNEIRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVNRSGNSKWLCGRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQESGEEILGVSAKELYMLKYEEQDDVKFGEILRSKIFDQFLFKLKIKEEMYGDEQRVKNTVVKADRVNHSSESKYMLDLLSKFSRLNAVEAFGHIEKTKQKWSRFVGKPNDF | 712 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 49083464 | 49087603 | - | Maker00003504 | Lcy4g2255 | 631781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy4g2255 | 712 | CDD | RPA1_DBD_C | 509 | 682 | IPR047192 | - | |
Lcy4g2255 | 712 | Gene3D | - | 239 | 349 | IPR012340 | - | |
Lcy4g2255 | 712 | FunFam | Replication protein A subunit | 352 | 490 | - | - | |
Lcy4g2255 | 712 | CDD | RPA1_DBD_B | 374 | 481 | - | - | |
Lcy4g2255 | 712 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 87 | IPR012340 | - | |
Lcy4g2255 | 712 | CDD | RPA1N | 9 | 87 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
Lcy4g2255 | 712 | Gene3D | - | 493 | 684 | IPR012340 | - | |
Lcy4g2255 | 712 | NCBIfam | replication factor-a protein 1 (rpa1) | 147 | 682 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lcy4g2255 | 712 | SUPERFAMILY | Nucleic acid-binding proteins | 357 | 487 | IPR012340 | - | |
Lcy4g2255 | 712 | Pfam | OB-fold nucleic acid binding domain | 255 | 325 | IPR004365 | GO:0003676(InterPro) | |
Lcy4g2255 | 712 | FunFam | Replication protein A subunit | 491 | 683 | - | - | |
Lcy4g2255 | 712 | SUPERFAMILY | Nucleic acid-binding proteins | 506 | 683 | IPR012340 | - | |
Lcy4g2255 | 712 | CDD | RPA1_DBD_A | 242 | 345 | - | - | |
Lcy4g2255 | 712 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 87 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
Lcy4g2255 | 712 | SUPERFAMILY | Nucleic acid-binding proteins | 239 | 352 | IPR012340 | - | |
Lcy4g2255 | 712 | Gene3D | - | 3 | 173 | IPR012340 | - | |
Lcy4g2255 | 712 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 241 | 675 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
Lcy4g2255 | 712 | Gene3D | - | 352 | 492 | IPR012340 | - | |
Lcy4g2255 | 712 | Pfam | Replication factor-A C terminal domain | 525 | 676 | IPR013955 | - | |
Lcy4g2255 | 712 | Pfam | Replication protein A OB domain | 363 | 467 | IPR031657 | - | |
Lcy4g2255 | 712 | FunFam | Replication protein A subunit | 239 | 348 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g2255 | Lcy-Chr4:49083464 | Lcy6g2277 | Lcy-Chr6:47469955 | 1.20E-246 | dispersed | |
Lcy4g2255 | Lcy-Chr4:49083464 | Lcy8g0888 | Lcy-Chr8:32006151 | 3.36E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy4g2255 | K07466 | - | csv:101207583 | 1021.92 |