Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2261 ATGAGCGGAAGAAACAGATTCCCATTTACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCCGATCTGCTCTTCACCATTAAGAGAACCTCTTTGGATTCTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTACTTGCAAATGGGTTCGGGGAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACTACTCTAAACTCTAATCCATCCACCCCAGCCATCTCTTCCATCACCCAGAACTCCACTCTCTCTTCTTCCTCTCATTCCCTTGCTTCACTCACCAACTCATTACCCTCTGAAACTCATAGCCAACACCTCCACCATTCTTGTTTCAATACTCATCCTCCTCACCCTTTTCTCTATCAACATGGCTCTTCTTCAAGGCCCCCTGGTTCTGGCCATTTGCAGCAAAACTCCAACACCTCCTTGCTTCTGGACCCAGGTTCTTACTCCCACAACAACCCAGATTACAGGTATGTTTATGGGGTGAAGGAAGATGATGAGCATCCCTTTCTATCGGAAGAACACTCTGGCAACATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTGACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGTGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACTGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCACAATGAAAGCTGA 1149 46.39 MSGRNRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTLNSNPSTPAISSITQNSTLSSSSHSLASLTNSLPSETHSQHLHHSCFNTHPPHPFLYQHGSSSRPPGSGHLQQNSNTSLLLDPGSYSHNNPDYRYVYGVKEDDEHPFLSEEHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDHYYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSIPNSSQHDFSSIFSSNKHNES 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49124985 49126323 - Maker00003716 Lcy4g2261 631787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2261 382 MobiDBLite consensus disorder prediction 341 382 - -
Lcy4g2261 382 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy4g2261 382 PANTHER GROWTH-REGULATING FACTOR 5 3 366 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lcy4g2261 382 MobiDBLite consensus disorder prediction 151 173 - -
Lcy4g2261 382 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy4g2261 382 MobiDBLite consensus disorder prediction 151 212 - -
Lcy4g2261 382 MobiDBLite consensus disorder prediction 345 382 - -
Lcy4g2261 382 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Lcy4g2261 382 Pfam WRC 77 119 IPR014977 -
Lcy4g2261 382 MobiDBLite consensus disorder prediction 188 212 - -
Lcy4g2261 382 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2152 Lcy-Chr13:40427129 Lcy4g2261 Lcy-Chr4:49124985 9.30E-35 dispersed
Lcy1g0890 Lcy-Chr1:7722616 Lcy4g2261 Lcy-Chr4:49124985 5.36E-33 dispersed
Lcy13g0107 Lcy-Chr13:1015679 Lcy4g2261 Lcy-Chr4:49124985 1.24E-65 transposed
Lcy5g0385 Lcy-Chr5:3950668 Lcy4g2261 Lcy-Chr4:49124985 5.25E-33 transposed
Lcy8g0935 Lcy-Chr8:33253695 Lcy4g2261 Lcy-Chr4:49124985 2.82E-47 transposed
Lcy2g0959 Lcy-Chr2:8902446 Lcy4g2261 Lcy-Chr4:49124985 8.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20033 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2261 - - - 0.0