Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2261 ATGAGCGGAAGAAACAGATTCCCATTTACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCTGTCCCTCCCGATCTGCTCTTCACCATTAAGAGAACCTCTTTGGATTCTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTACTTGCAAATGGGTTCGGGGAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAGAAATGGAGATGCTCCAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGACATATGCACAGAGGTAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAACTACTCTAAACTCTAATCCATCCACCCCAGCCATCTCTTCCATCACCCAGAACTCCACTCTCTCTTCTTCCTCTCATTCCCTTGCTTCACTCACCAACTCATTACCCTCTGAAACTCATAGCCAACACCTCCACCATTCTTGTTTCAATACTCATCCTCCTCACCCTTTTCTCTATCAACATGGCTCTTCTTCAAGGCCCCCTGGTTCTGGCCATTTGCAGCAAAACTCCAACACCTCCTTGCTTCTGGACCCAGGTTCTTACTCCCACAACAACCCAGATTACAGGTATGTTTATGGGGTGAAGGAAGATGATGAGCATCCCTTTCTATCGGAAGAACACTCTGGCAACATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTGACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGTGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACTGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCACAATGAAAGCTGA 1149 46.39 MSGRNRFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLDSPFISRLFPHQYPDVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTTLNSNPSTPAISSITQNSTLSSSSHSLASLTNSLPSETHSQHLHHSCFNTHPPHPFLYQHGSSSRPPGSGHLQQNSNTSLLLDPGSYSHNNPDYRYVYGVKEDDEHPFLSEEHSGNMRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDHYYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSIPNSSQHDFSSIFSSNKHNES 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49124985 49126323 - Maker00003716 Lcy4g2261 631787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2261 382 MobiDBLite consensus disorder prediction 341 382 - -
Lcy4g2261 382 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy4g2261 382 PANTHER GROWTH-REGULATING FACTOR 5 3 366 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lcy4g2261 382 MobiDBLite consensus disorder prediction 151 173 - -
Lcy4g2261 382 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy4g2261 382 MobiDBLite consensus disorder prediction 151 212 - -
Lcy4g2261 382 MobiDBLite consensus disorder prediction 345 382 - -
Lcy4g2261 382 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Lcy4g2261 382 Pfam WRC 77 119 IPR014977 -
Lcy4g2261 382 MobiDBLite consensus disorder prediction 188 212 - -
Lcy4g2261 382 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2152 Lcy-Chr13:40427129 Lcy4g2261 Lcy-Chr4:49124985 9.30E-35 dispersed
Lcy1g0890 Lcy-Chr1:7722616 Lcy4g2261 Lcy-Chr4:49124985 5.36E-33 dispersed
Lcy13g0107 Lcy-Chr13:1015679 Lcy4g2261 Lcy-Chr4:49124985 1.24E-65 transposed
Lcy5g0385 Lcy-Chr5:3950668 Lcy4g2261 Lcy-Chr4:49124985 5.25E-33 transposed
Lcy8g0935 Lcy-Chr8:33253695 Lcy4g2261 Lcy-Chr4:49124985 2.82E-47 transposed
Lcy2g0959 Lcy-Chr2:8902446 Lcy4g2261 Lcy-Chr4:49124985 8.00E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g2261 . 2 110 GRF Transcription Factor Family AT3G13960 73.0 3.5e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20033 None None None None Lcy TF