Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2265 ATGGCGGTGAAGAAGATGAAGTGGAGATCCATCTTCTCGAGCTGCTGCGAGTGCGAGGTGGATTCTCACTCGGAGGTGATGAAAGTAGTGGCGGAGAAGCCGAGTTCGTCCCAAAGGATTTTCAAACTGGATTTGAGTAACCCCAACTCCACTCTCTCCGAGGACCTCTCCATCTCTCTCGCCGGATCTCACATTCACGCCTTCACCCTCGCCGAGCTCAAGCTCATCTCTCACTCCTTTTCTTCCTCCAACTTCCTCGGAGAGGGCGGCTTCGGCCCTGTCTACAAAGGCTTCATCGACCACACTCTCAGGCCTGGCTTACCCCCTCAGCCCGTCGCCATTAAGCTCCTCGATTTGGACGGCACCCAAGGCCACCGGGAGTGGCTGGTGATTTTTCTTGGGCAACTCAAGCACGCCCACCTCGTGAAGCTCATCGGCTACTGCTGCGAAGACGAGCATCGGCTGCTCGTCTACGAGTATATGCCCAGAGGAAGCCTCGAGAATCAACTTTTCAAAAAATATTCAATCCCATTGCCGTGGTCGACGAGAATGAAGATCGCCCTTGGAGCTGCGAAGGGTCTGGCCTTCCTCCACGAAGCAGACAAGCCAGTCATTTACCGAGATTTCAAAGCTTCAAACGTACTGCTCGACTCGGATTACACTGCGAAGCTGTCTGATTTTGGACTGGCAAAAGATGGTCCCGAAGGAGACAACACACACGTCTCCACACGAGTAATGGGCACCCATGGATACGCCGCGCCGGAGTACATAATGACGGGGCATTTGACGGCGATGAGCGATGTGTATAGCTTCGGAGTAGTGCTTTTGGAGCTGCTGACGGGGCGGAGGTCGGTGGAGAAGAGCAGCCGCAAGAGGCAGCAGAATTTGGCAGAGTGGGCGAGGCCGATGCTGAACGATCCGAGGAAGCTAAGCCGTATAATAGACCCGAGACTGGAAGGTCAATACTCGGAAATGGGAGCTCAAAAGGCAGCGTCGTTGGCGTACCAGTGCTTGAGCCACCGCCCAAAGCAGAGGCCCACCATGAGCGCCGTCGTCAAGATATTAGAGCCACTCAAGGATTTCGACGACATTTCTTCCGCCACATTCGTTTACACGGTTCTCTCCGAAAACGATCTCCACAAGAAACCAATTGAAGAAGCCAAAAAGTAA 1170 53.93 MAVKKMKWRSIFSSCCECEVDSHSEVMKVVAEKPSSSQRIFKLDLSNPNSTLSEDLSISLAGSHIHAFTLAELKLISHSFSSSNFLGEGGFGPVYKGFIDHTLRPGLPPQPVAIKLLDLDGTQGHREWLVIFLGQLKHAHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNVLLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPMLNDPRKLSRIIDPRLEGQYSEMGAQKAASLAYQCLSHRPKQRPTMSAVVKILEPLKDFDDISSATFVYTVLSENDLHKKPIEEAKK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49148513 49150975 + Maker00003837 Lcy4g2265 631791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2265 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2265 389 FunFam Serine/threonine-protein kinase BIK1 47 160 - -
Lcy4g2265 389 ProSiteProfiles Protein kinase domain profile. 80 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2265 389 FunFam Probable serine/threonine-protein kinase PBL8 161 373 - -
Lcy4g2265 389 PANTHER OS01G0588500 PROTEIN-RELATED 55 359 IPR050823 -
Lcy4g2265 389 Pfam Protein tyrosine and serine/threonine kinase 84 354 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy4g2265 389 Gene3D Transferase(Phosphotransferase) domain 1 161 371 - -
Lcy4g2265 389 SUPERFAMILY Protein kinase-like (PK-like) 55 356 IPR011009 -
Lcy4g2265 389 Gene3D Phosphorylase Kinase; domain 1 45 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1057 Lcy-Chr2:10382090 Lcy4g2265 Lcy-Chr4:49148513 2.79E-138 dispersed
Lcy4g2265 Lcy-Chr4:49148513 Lcy9g1932 Lcy-Chr9:44326369 1.06E-158 dispersed
Lcy7g0034 Lcy-Chr7:290469 Lcy4g2265 Lcy-Chr4:49148513 7.98E-30 dispersed
Lcy5g0016 Lcy-Chr5:400059 Lcy4g2265 Lcy-Chr4:49148513 1.68E-64 transposed
Lcy13g2302 Lcy-Chr13:41904341 Lcy4g2265 Lcy-Chr4:49148513 1.89E-88 wgd
Lcy2g0976 Lcy-Chr2:9106935 Lcy4g2265 Lcy-Chr4:49148513 6.53E-203 wgd
Lcy3g2246 Lcy-Chr3:49292874 Lcy4g2265 Lcy-Chr4:49148513 1.44E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65891 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2265 - - - 0.0