Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2271 ATGTCAACGAAACTGTCCATCGCTCCTATTCTTAGAAGCAGGTGTAATTCTGGGAATGATCTATTTTCGAACGCCAACAATGACACAACTTCCTTCATTCCCAATTACAACGAACCGGAAAAAAAGCTTTGCCCAACACACTCGCAGACAACCACGCAATTCTTCGAACAGCGGCTGGTTTCTATCCGGAGCTATTCCATTTTCCGTTCCGGCTCTGCAATGGCCGCTGTTCGAATTGTCTTCCTCTTCCTGATCTTCCTTCTTGGCGGTCTACCTCTCTCCTGTTCCCTCACCGAGAACGAGGCCCTCCTCAAGCTCAAGCAATCCTTCGCCCACTCCGAATCCCTCAATTCCTGGACCTCCGACTCCGTCCCCTGCTCCGCTCGATGGACCGGCATCATCTGTAACAGGGGCGTCATCACCGGCCTCCATCTCACGGGCCTCCAACTCTCCGGCAAGATCGACGTCGAAGCTCTCCTCGAGCTGCGCGGGCTTCGCACCATCAGCTTCGTCAACAACAGCTTCTCCGGGCCCATCCCGGAGTTGAACAGAATCGGCGTTCTCAAGTCCATGCTCCTGTCTGGGAACGACTTCTCCGGGGTCATACCAAACGACTTCTTTTCATCCCTGACGTCCCTCAAGAAGGTCTGGCTCTCCTTCAACAAGTTCTCCGGGAACATTCCACACTCTCTGGGACAACTCTCCCATCTGATCGAACTCCACCTCGAAAACAACCAATTCTCAGGGCCCATCCCCCACCTGAAGCAGGCCTCCATAACCTCCCTCGACTTCTCCAACAACAAGCTAGAGGGAGAGATCCCGGAGAGCCTATCCAGATTCGAAGCAAAGGCATTTGCCGGGAACGAGGCCCTGTGCGGGAAACCGCTCCCCAAATCATGCGACAACAACGCGAGGATTTCGGAGGAAAAGCCCCCTCCGTCTCCCCCCGGGGAGTCCCAAGGCAACGTCTCCAAGCTAGTAGTGGCGTCGTTGATAGCGGTGGTCGTGTTTCTGATGGTCTTCATATTTCTGAGCGCGTCCAAGCGGAGAGAGGACGAGTTCAGCGTGCTGGGGAGGGAGCACATGGAGGAGGTGGTGGAGGTGCACGTGCCGCATGATAAGGGGGGCAGGGAGCAGTCGAGCAGGAGAGGTGGGGACTCGAGGAGAGGGTCGCAACAGGGGAAGGGGGCGATGAGCGATCTGGTGGTAGTGAATGATGACAAGGGTACGTTCGGGTTGGCGGATTTGATGAAGGCCGCGGCGGAGGTGCTGGGGAATGGTGGCTTGGGCTCTGCCTACAAGGCGGTGATGGCCAACGGGCTGTCGGTGGTGGTGAAGAGAATGAGAGAAATGAACAAACTGGGGAAGGATGGGTTCGATGCAGAGATGAGGCGGCTGGGAAAGCTGCGACATCAGAACATACTCACGCCTTTGGCCTACCATTACAGGAGAGAGGAGAAGCTGCTGGTGTCGGAGTACATTCCAAAGGGAAGCCTCTTGTATGTGTTGCATGGTGACCGTGGAGCCTGCCATGCGGAGCTTAACTGGGGCACCCGGTTAAGGATTGTGAAGGGGATCGGCAGGGGTATGGGGTTCCTCCATTCCGAATTCGCGACCTACGATGTTCCGCATGGCAATCTGAAATCCAGCAACGTTCTTCTAAGCGACAACTACGAGCCCCTCCTCAGCGACTACGCCTTTCATCCGCTAATCAATCCCAACAATGCCACGCAGGCGATGTTTGCGTACAGATCCCCTGAGTACACCCAATACCAGGAACTTTCCCCCAAGTCTGACGTTTACTGCCTTGGAATTATCATTCTCGAAATTATGACCAGCAAATTCCCCTCTCAATATCTTAGCAATGGCAAGGGCGGTACCGATGTGGTGCAGTGGGTCTCCTCCGCAGTTTCCGAGAAGAGGGAGGCCGAACTCATCGACCCTGAGATTGCAAACGACACCGGTGCACTCGATCGCATGGTCCAACTCCTCAGAATCGGCGCCGATTGCACTCTCAGCAATCCTCAGCAACGGCCAGAAATGAGGGAAGCCATTAGGAGAATAGAAGAGATATGA 2076 55.01 MSTKLSIAPILRSRCNSGNDLFSNANNDTTSFIPNYNEPEKKLCPTHSQTTTQFFEQRLVSIRSYSIFRSGSAMAAVRIVFLFLIFLLGGLPLSCSLTENEALLKLKQSFAHSESLNSWTSDSVPCSARWTGIICNRGVITGLHLTGLQLSGKIDVEALLELRGLRTISFVNNSFSGPIPELNRIGVLKSMLLSGNDFSGVIPNDFFSSLTSLKKVWLSFNKFSGNIPHSLGQLSHLIELHLENNQFSGPIPHLKQASITSLDFSNNKLEGEIPESLSRFEAKAFAGNEALCGKPLPKSCDNNARISEEKPPPSPPGESQGNVSKLVVASLIAVVVFLMVFIFLSASKRREDEFSVLGREHMEEVVEVHVPHDKGGREQSSRRGGDSRRGSQQGKGAMSDLVVVNDDKGTFGLADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRMREMNKLGKDGFDAEMRRLGKLRHQNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHAELNWGTRLRIVKGIGRGMGFLHSEFATYDVPHGNLKSSNVLLSDNYEPLLSDYAFHPLINPNNATQAMFAYRSPEYTQYQELSPKSDVYCLGIIILEIMTSKFPSQYLSNGKGGTDVVQWVSSAVSEKREAELIDPEIANDTGALDRMVQLLRIGADCTLSNPQQRPEMREAIRRIEEI 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49197189 49200191 - Maker00003446 Lcy4g2271 631797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2271 691 ProSiteProfiles Protein kinase domain profile. 418 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2271 691 Pfam Protein kinase domain 422 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy4g2271 691 FunFam Nuclear pore complex protein NUP107 96 253 - -
Lcy4g2271 691 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515(InterPro)
Lcy4g2271 691 Pfam Leucine Rich Repeat 258 279 IPR001611 GO:0005515(InterPro)
Lcy4g2271 691 SUPERFAMILY L domain-like 94 279 - -
Lcy4g2271 691 Gene3D Phosphorylase Kinase; domain 1 386 493 - -
Lcy4g2271 691 Gene3D Ribonuclease Inhibitor 97 255 IPR032675 -
Lcy4g2271 691 SUPERFAMILY Protein kinase-like (PK-like) 422 687 IPR011009 -
Lcy4g2271 691 Gene3D Transferase(Phosphotransferase) domain 1 494 691 - -
Lcy4g2271 691 Gene3D Ribonuclease Inhibitor 258 298 IPR032675 -
Lcy4g2271 691 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 98 691 IPR046959 -
Lcy4g2271 691 Pfam Leucine rich repeat N-terminal domain 99 136 IPR013210 -
Lcy4g2271 691 MobiDBLite consensus disorder prediction 367 398 - -
Lcy4g2271 691 MobiDBLite consensus disorder prediction 302 321 - -
Lcy4g2271 691 MobiDBLite consensus disorder prediction 367 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2271 Lcy-Chr4:49197189 Lcy9g1757 Lcy-Chr9:42775728 5.24E-107 dispersed
Lcy4g2271 Lcy-Chr4:49197189 Lcy2g0359 Lcy-Chr2:2949894 5.93E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65892 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2271 K28077 - csv:101215919 1022.31