Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy4g2273 ATGAACAATCTGTTTATGATCCAATCAATAAACAGCAGTTCCTCTCGGGCCAGGAGAGGATGGGCGCCCTTGTTCAAGACCCGGAATCAGCCCTTAAGGGAACACACATCTGCTTACCCCAATAGGGGAAAGAGTGAATTCCATCTTGTAATGTCATGTTCCCAGCCCCCACTCGGTCTTGCCCCTGAAATGGATACCCCCACTCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAAGTGGGCCGTATCACATAGTGTTACCAGGATAAGGCCTCTGATTTTCCGGCGACAAGTCCGTGTCATCGCCACCTTGATCCCCGCGACAATTTCGCTGTCCACTTTTTTCCTTCACAAGCCAAACTGGAAAACTATACTCGCTTCGGGGATCCTCCGCTCTACCTCGCCCTTTTCGCTTCTATCATTTAATTTTTCCTTGACGGCTGACGCGGTGGACTTGCCGGCGGCTTCTGTTTGCGAGGAGCTTAGGCGATACCTGTTGTGGCTTTCAGGCACTGGGACTGATTTCCTTTTGGATTTGTCCGTTATATCTGACAGTATGAAAGCTCCCCCAAATGGGTTTCTGGCCAACTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCATCAAAGTTGATCTGCATGCTCCATAATGTCACATTACACGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGACGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCTGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGTCAGATTTTTTGCTGGGTTGATCACCCATGGGAGGATTAACACCATGGGTTTGTATTCAGGGATTGTCTTCCGCTCTGTTGGCCCACAATCAGGCTGCCATGATTACATCATTGTTGATGATGAACATGAACTCGAAACTCAAGTTGGGGAAGATGATTTCTTGAGCAAGGACTACTCGATGCAACCCCCTGCTCAGGAGCTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGATGATCGAGGAGTTCCTTCCCCATTCGCCTTTTTGGGATCAGGGGAACTTCTTATGGCAGGTCTTATTTTGTTGGATTGGAGTCCTCACTTTCTTAGGACATTTGAACTTCCAAATCACAGATTGGACAAAATTACTCCATTTGTTATTCTTCTTAGCAAACTTATCAACCACCAGGTCCCAAAAGGACTTTTCTGCAATTTCCACCTAAACGGATGCCAAGGCCAACCAAAAAGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCCGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCGCAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAATCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACCCAAGTTTCACTTGGGATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTCCGCAGATATATGGGTACAATCACTGGTATCAGTGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGTGACCTTGAGGATCGTTTTTGCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACGTCAAGCTCAATCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTTTGCATGGAACTCTTACTAATGATGACCCATCTAAATTATTGAGTTTTCAAGCACCAGTAATGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAGTTGCCAACAACTACGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAACAACAGCAGCAGCAGATGCCACCCCAGCAGGAACCACAGCAGCAGCAGCAACAGCAACAGTCACAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCACAACAGCCACAACGTCAACAGCAGACCTCCCAATCCGCTCTACTGAACAATGGTGTAGCTGCAACTAACCATTTGCCAAATCAGAGTTTGCAACAACCACTTGTTTACTCTCAGCTACAGCAACAGCAATTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTATACAGCAAGAAACACAGTTTCAGCCACAAATAGAGCAGCAACCTAGCCTTCTTCCAAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATTTTATCAGAGCAGCAACTTCAACTACAGCTGCTACAGAAGCTGCAACAACAGCAACAGCAGCAGCAGCAACCGTTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCATGTCCATCAGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGCCCCAGCAGGTTCCTATGACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTAGAGCATATTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCAGTGTCAAACCTGCTCAATAAGAACCAACAAGGGGCAGCCACACTGGGGGGAGATTCGGTAGTAGAGCCTGCAACTAACCTGGCTCAGGAGCTACAAAGCAAACCTGATTTGCGGGTCAAACCTGAGTTTCCTAACTCAAAAGGATCCGACCAACTAAAATATAAAGGCACCATTCCTGATCAATTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACGAAATAATATCCCGTTCAGTAATAGCATTGATGGATTGGCACCAGATACCTTATTGTCGAGGGGATACGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGCGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAACTTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCCGGAGCCTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCACTCGTTACAAAGGATATGACGAACTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGCACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTTTAGTTGGCGACGATCCTTGGGAGGAGTTTGTGAGCTGTGTCCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCATGGAGAGGGCAGTATGATGACAATTCGGCTGCATCATTCAATCGATGA 4329 45.58 MNNLFMIQSINSSSSRARRGWAPLFKTRNQPLREHTSAYPNRGKSEFHLVMSCSQPPLGLAPEMDTPTRMSPTWMLWIIASVSNTKWAVSHSVTRIRPLIFRRQVRVIATLIPATISLSTFFLHKPNWKTILASGILRSTSPFSLLSFNFSLTADAVDLPAASVCEELRRYLLWLSGTGTDFLLDLSVISDSMKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKDALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRFFAGLITHGRINTMGLYSGIVFRSVGPQSGCHDYIIVDDEHELETQVGEDDFLSKDYSMQPPAQELVARDLHDNSWTFRHIYRDDRGVPSPFAFLGSGELLMAGLILLDWSPHFLRTFELPNHRLDKITPFVILLSKLINHQVPKGLFCNFHLNGCQGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPVTLRIVFADDESDIENAFKRAMPWFGDDFGMKDTSSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVMSSPNLQFSKANQQNQVGQLPTTTWSQQQQLQQLLQVPASQQLQQQQQQQMPPQQEPQQQQQQQQSQQLPQQQQLQSQQPQRQQQTSQSALLNNGVAATNHLPNQSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTSIQQETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPILSEQQLQLQLLQKLQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQLPPLPLSNQQQFNTSGGSFQTEKLNSNGFSSLGLMQPQQVPMTQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDSVVEPATNLAQELQSKPDLRVKPEFPNSKGSDQLKYKGTIPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49213188 49237877 - Maker00003717 Lcy4g2273 631799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy4g2273 1442 MobiDBLite consensus disorder prediction 1423 1442 - -
Lcy4g2273 1442 SUPERFAMILY CAD & PB1 domains 1328 1393 - -
Lcy4g2273 1442 MobiDBLite consensus disorder prediction 1034 1078 - -
Lcy4g2273 1442 MobiDBLite consensus disorder prediction 921 950 - -
Lcy4g2273 1442 MobiDBLite consensus disorder prediction 839 884 - -
Lcy4g2273 1442 SUPERFAMILY DNA-binding pseudobarrel domain 404 436 IPR015300 -
Lcy4g2273 1442 Pfam AUX/IAA family 1312 1402 IPR033389 -
Lcy4g2273 1442 FunFam Auxin response factor 612 684 - -
Lcy4g2273 1442 SUPERFAMILY DNA-binding pseudobarrel domain 472 578 IPR015300 -
Lcy4g2273 1442 Gene3D - 316 550 IPR015300 -
Lcy4g2273 1442 MobiDBLite consensus disorder prediction 1156 1178 - -
Lcy4g2273 1442 Gene3D - 1310 1404 - -
Lcy4g2273 1442 Pfam B3 DNA binding domain 467 550 IPR003340 GO:0003677(InterPro)
Lcy4g2273 1442 SUPERFAMILY DNA-binding pseudobarrel domain 308 349 IPR015300 -
Lcy4g2273 1442 Coils Coil 996 1016 - -
Lcy4g2273 1442 Pfam Auxin response factor 575 657 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy4g2273 1442 ProSiteProfiles PB1 domain profile. 1315 1408 IPR053793 -
Lcy4g2273 1442 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 401 1406 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy4g2273 1442 Gene3D - 612 683 - -
Lcy4g2273 1442 FunFam Auxin response factor 1310 1404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0940 Lcy-Chr10:29800162 Lcy4g2273 Lcy-Chr4:49213188 1.21E-21 dispersed
Lcy13g1038 Lcy-Chr13:22689686 Lcy4g2273 Lcy-Chr4:49213188 2.83E-45 dispersed
Lcy3g0448 Lcy-Chr3:15645133 Lcy4g2273 Lcy-Chr4:49213188 3.96E-56 dispersed
Lcy4g2273 Lcy-Chr4:49213188 Lcy5g1695 Lcy-Chr5:39392044 3.08E-173 dispersed
Lcy4g2273 Lcy-Chr4:49213188 Lcy4g1586 Lcy-Chr4:39949846 8.52E-267 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20034 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy4g2273 K14486 - csv:101210917 694.886