Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0015 | ATGTCAGCTGTGCAAACGCTCCTACTTTTGGTTTTTTTCTACGCTGGAACCGACTTAGCCGATTCTTTAACTGATCCCCACGATTCAATTGGCTCCCTTATAAAACCATTTTTCGATCCTTTCCAAATTGATGAGCTTTGGCATGTTGTTGGTGCAGCTGTGGCGCTGGAGTCCCTGAAAAACGAATGGCAAAATACGCCACCAAGCTGGGGAACATCAAACGATCCATGTGGTACTCCCTGGGAAGGAGTGACTTGCGTCGATTCAAGAGTAACTGCACTGAGATTATCAACCATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGTCTGACTGAACTAACATCATTGGACCTTTCGTTCAACAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACGGAATTTGAAAATCTTGGCTTTAAATTCTAACAATTTCACTGGTACCATACCGCCATCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCGAATCTCCTGGTTTGGACCTCCTTCTGAAGGCTAAACATTTTCATTTCAACAAAAACAAGCTATCAGGTTCCATTTCACCAAAACTTTTTAGCTCTGAAATGGTATTAATACACATATTATTTGATGGAAATGATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGGAATTATCTAAACGGAACTGTCCCGTCAAATCTGAACAACCTCACAAATATCAATGAATTGAATTTAGCGAACAATAAGTTGACTGGTCCAATGCCAAACTTAACTCAAATGAGTTCACTAAATTATGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCAGAATGGTTCTCAAATCTACAATTTCTCACCACTCTGATTGTTGAATATGGATCATTACGAGGATCTGTGCCACAAGGAGTTTTTAGCTTACCACAAATCCAACAAATGTTGATAGGGAATCCTGTGTGTAGCACTGATGTTACCCTCTCAAATACGAACTATTGCCAGCTTCAAAATCACCCGGTGCAACCCTATTCTACCAGCCTTGCCCGCTGTGGAAGTAAGTCATGTGCGCCTGAAGAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTTGAAGGGACTTTATACTTTAGAGCGCCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTCAATTCACTGGAAAAGAGCCTTTGGGAAAAACTGGACCTTACGCCTGGTTCAGTTTCTATTCAAAACCCTTTCTTTAATGTTGACGATTATCTTCAGATGCAGCTTGCTCTTTTTCCACCCAACGGACAGTATTTTAATAGGTCAGAAGTTCAGAGGATTGGGTTTGACTTGAGTAATCAAACTTACAAACCTCCCAAAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTATGGTTTTTCAGCATTAATGTCTCAAGTCACGCCTGGAGGAACTTCAATTAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCGTTCTAGGCCTCGTTGGAGTTGGAATATATGCGATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGATTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGAAACGATAGTGGAGGTGCACCACAATTGAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTCGATGGACAAGTAGTTGCAATCAAGAGAGCTCAACAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTAGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATATATGCCTAATGGAACACTGAGAGATAGTCTATCTGGGAAATCTGGTATTAGTCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTCTTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGATAGTGAAAAGGGACACGTGTCTACTCAAGTGAAAGGAACACTGGGTTATTTGGATCCTGAATATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGAGTGGTTATGTTGGAATTGGTAACTGCTAAGCTGCCTATTGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGTATGCTGATGAATAAAAGTGAAGAAGAATATTATGGTTTGAAGCAGATAATGGATGCAACCATAATAAACAATACAACAACTATTATTGGACTTGGAAGGTTCTTAGAGTTGGCCATGCAATGCGTTGAAGAATCAGCAGCAGAGCGTCCCACAATGAGTGAAGTGGTCAAAGCAATTGAAAGTATCTTGCAGAATGATGGAATAAATACGAACACAACATCTGCATCCTCATCTGCAACCGACTTTGGGACTTCCAAAACCGCTCCTAGACATCCCTATAATGATCCTATACCAAAAAAGGACCCTAATGACAGTAATGCTTTTGATTACAGCGGTGGATACACTCTTTCAGCAAAAGTGGAACCCAAATAG | 2781 | 41.5 | MSAVQTLLLLVFFYAGTDLADSLTDPHDSIGSLIKPFFDPFQIDELWHVVGAAVALESLKNEWQNTPPSWGTSNDPCGTPWEGVTCVDSRVTALRLSTMGLKGKLGGDIGGLTELTSLDLSFNKDLTGSISPALGDLRNLKILALNSNNFTGTIPPSLGKLSKLYWLDLADNQLTGSLPVSTSESPGLDLLLKAKHFHFNKNKLSGSISPKLFSSEMVLIHILFDGNDFSGSIPPTLGLVKTLEVLRLDRNYLNGTVPSNLNNLTNINELNLANNKLTGPMPNLTQMSSLNYVDLSNNSFDSSAAPEWFSNLQFLTTLIVEYGSLRGSVPQGVFSLPQIQQMLIGNPVCSTDVTLSNTNYCQLQNHPVQPYSTSLARCGSKSCAPEEKLNPQSCECAFPFEGTLYFRAPSFRELSNVTLFNSLEKSLWEKLDLTPGSVSIQNPFFNVDDYLQMQLALFPPNGQYFNRSEVQRIGFDLSNQTYKPPKEFGPFYFIASPYGFSALMSQVTPGGTSISPGVIIGVAIGCAFLVLGLVGVGIYAIRQKKRAEKAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGYGKVYRGMLVDGQVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEYMPNGTLRDSLSGKSGISLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELVTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIMDATIINNTTTIIGLGRFLELAMQCVEESAAERPTMSEVVKAIESILQNDGINTNTTSASSSATDFGTSKTAPRHPYNDPIPKKDPNDSNAFDYSGGYTLSAKVEPK | 926 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 386987 | 395347 | - | Maker00033149 | Lcy5g0015 | 631830 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0015 | 926 | Gene3D | Phosphorylase Kinase; domain 1 | 565 | 666 | - | - | |
Lcy5g0015 | 926 | Pfam | Protein tyrosine and serine/threonine kinase | 592 | 861 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0015 | 926 | Gene3D | Ribonuclease Inhibitor | 53 | 363 | IPR032675 | - | |
Lcy5g0015 | 926 | Gene3D | Transferase(Phosphotransferase) domain 1 | 667 | 890 | - | - | |
Lcy5g0015 | 926 | Pfam | Leucine rich repeat N-terminal domain | 55 | 86 | IPR013210 | - | |
Lcy5g0015 | 926 | SUPERFAMILY | Protein kinase-like (PK-like) | 576 | 877 | IPR011009 | - | |
Lcy5g0015 | 926 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 711 | 723 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0015 | 926 | FunFam | Leucine-rich repeat protein kinase family protein | 188 | 283 | - | - | |
Lcy5g0015 | 926 | MobiDBLite | consensus disorder prediction | 871 | 890 | - | - | |
Lcy5g0015 | 926 | FunFam | Leucine-rich repeat protein kinase family protein | 560 | 666 | - | - | |
Lcy5g0015 | 926 | SUPERFAMILY | L domain-like | 66 | 347 | - | - | |
Lcy5g0015 | 926 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 667 | 879 | - | - | |
Lcy5g0015 | 926 | CDD | STKc_IRAK | 597 | 865 | - | - | |
Lcy5g0015 | 926 | ProSitePatterns | Protein kinases ATP-binding region signature. | 597 | 619 | IPR017441 | GO:0005524(InterPro) | |
Lcy5g0015 | 926 | MobiDBLite | consensus disorder prediction | 871 | 912 | - | - | |
Lcy5g0015 | 926 | Pfam | Leucine Rich Repeat | 289 | 312 | IPR001611 | GO:0005515(InterPro) | |
Lcy5g0015 | 926 | Pfam | Leucine Rich Repeat | 243 | 264 | IPR001611 | GO:0005515(InterPro) | |
Lcy5g0015 | 926 | SMART | serkin_6 | 591 | 866 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0015 | 926 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 68 | 863 | - | - | |
Lcy5g0015 | 926 | ProSiteProfiles | Protein kinase domain profile. | 591 | 866 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0015 | 926 | FunFam | Leucine-rich repeat family protein | 52 | 187 | - | - | |
Lcy5g0015 | 926 | Pfam | Leucine rich repeat | 114 | 174 | IPR001611 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0876 | Lcy-Chr11:26002677 | Lcy5g0015 | Lcy-Chr5:386987 | 0 | dispersed | |
Lcy1g1635 | Lcy-Chr1:16732750 | Lcy5g0015 | Lcy-Chr5:386987 | 5.81E-102 | dispersed | |
Lcy5g0015 | Lcy-Chr5:386987 | Lcy9g1020 | Lcy-Chr9:33629571 | 0 | dispersed | |
Lcy1g0951 | Lcy-Chr1:8328528 | Lcy5g0015 | Lcy-Chr5:386987 | 8.64E-75 | wgd | |
Lcy11g0006 | Lcy-Chr11:57262 | Lcy5g0015 | Lcy-Chr5:386987 | 2.68E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65893 | None | None | None | None | Lcy | PK |
Pathway information
