Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0015 ATGTCAGCTGTGCAAACGCTCCTACTTTTGGTTTTTTTCTACGCTGGAACCGACTTAGCCGATTCTTTAACTGATCCCCACGATTCAATTGGCTCCCTTATAAAACCATTTTTCGATCCTTTCCAAATTGATGAGCTTTGGCATGTTGTTGGTGCAGCTGTGGCGCTGGAGTCCCTGAAAAACGAATGGCAAAATACGCCACCAAGCTGGGGAACATCAAACGATCCATGTGGTACTCCCTGGGAAGGAGTGACTTGCGTCGATTCAAGAGTAACTGCACTGAGATTATCAACCATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGTCTGACTGAACTAACATCATTGGACCTTTCGTTCAACAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACGGAATTTGAAAATCTTGGCTTTAAATTCTAACAATTTCACTGGTACCATACCGCCATCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCGAATCTCCTGGTTTGGACCTCCTTCTGAAGGCTAAACATTTTCATTTCAACAAAAACAAGCTATCAGGTTCCATTTCACCAAAACTTTTTAGCTCTGAAATGGTATTAATACACATATTATTTGATGGAAATGATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGGAATTATCTAAACGGAACTGTCCCGTCAAATCTGAACAACCTCACAAATATCAATGAATTGAATTTAGCGAACAATAAGTTGACTGGTCCAATGCCAAACTTAACTCAAATGAGTTCACTAAATTATGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCAGAATGGTTCTCAAATCTACAATTTCTCACCACTCTGATTGTTGAATATGGATCATTACGAGGATCTGTGCCACAAGGAGTTTTTAGCTTACCACAAATCCAACAAATGTTGATAGGGAATCCTGTGTGTAGCACTGATGTTACCCTCTCAAATACGAACTATTGCCAGCTTCAAAATCACCCGGTGCAACCCTATTCTACCAGCCTTGCCCGCTGTGGAAGTAAGTCATGTGCGCCTGAAGAGAAGTTAAACCCTCAGAGTTGTGAATGTGCCTTTCCATTTGAAGGGACTTTATACTTTAGAGCGCCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTCAATTCACTGGAAAAGAGCCTTTGGGAAAAACTGGACCTTACGCCTGGTTCAGTTTCTATTCAAAACCCTTTCTTTAATGTTGACGATTATCTTCAGATGCAGCTTGCTCTTTTTCCACCCAACGGACAGTATTTTAATAGGTCAGAAGTTCAGAGGATTGGGTTTGACTTGAGTAATCAAACTTACAAACCTCCCAAAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTATGGTTTTTCAGCATTAATGTCTCAAGTCACGCCTGGAGGAACTTCAATTAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCGTTCTAGGCCTCGTTGGAGTTGGAATATATGCGATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGATTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGAAACGATAGTGGAGGTGCACCACAATTGAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTCGATGGACAAGTAGTTGCAATCAAGAGAGCTCAACAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTAGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATATATGCCTAATGGAACACTGAGAGATAGTCTATCTGGGAAATCTGGTATTAGTCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTCTTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGATAGTGAAAAGGGACACGTGTCTACTCAAGTGAAAGGAACACTGGGTTATTTGGATCCTGAATATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGAGTGGTTATGTTGGAATTGGTAACTGCTAAGCTGCCTATTGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGTATGCTGATGAATAAAAGTGAAGAAGAATATTATGGTTTGAAGCAGATAATGGATGCAACCATAATAAACAATACAACAACTATTATTGGACTTGGAAGGTTCTTAGAGTTGGCCATGCAATGCGTTGAAGAATCAGCAGCAGAGCGTCCCACAATGAGTGAAGTGGTCAAAGCAATTGAAAGTATCTTGCAGAATGATGGAATAAATACGAACACAACATCTGCATCCTCATCTGCAACCGACTTTGGGACTTCCAAAACCGCTCCTAGACATCCCTATAATGATCCTATACCAAAAAAGGACCCTAATGACAGTAATGCTTTTGATTACAGCGGTGGATACACTCTTTCAGCAAAAGTGGAACCCAAATAG 2781 41.5 MSAVQTLLLLVFFYAGTDLADSLTDPHDSIGSLIKPFFDPFQIDELWHVVGAAVALESLKNEWQNTPPSWGTSNDPCGTPWEGVTCVDSRVTALRLSTMGLKGKLGGDIGGLTELTSLDLSFNKDLTGSISPALGDLRNLKILALNSNNFTGTIPPSLGKLSKLYWLDLADNQLTGSLPVSTSESPGLDLLLKAKHFHFNKNKLSGSISPKLFSSEMVLIHILFDGNDFSGSIPPTLGLVKTLEVLRLDRNYLNGTVPSNLNNLTNINELNLANNKLTGPMPNLTQMSSLNYVDLSNNSFDSSAAPEWFSNLQFLTTLIVEYGSLRGSVPQGVFSLPQIQQMLIGNPVCSTDVTLSNTNYCQLQNHPVQPYSTSLARCGSKSCAPEEKLNPQSCECAFPFEGTLYFRAPSFRELSNVTLFNSLEKSLWEKLDLTPGSVSIQNPFFNVDDYLQMQLALFPPNGQYFNRSEVQRIGFDLSNQTYKPPKEFGPFYFIASPYGFSALMSQVTPGGTSISPGVIIGVAIGCAFLVLGLVGVGIYAIRQKKRAEKAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGYGKVYRGMLVDGQVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEYMPNGTLRDSLSGKSGISLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELVTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIMDATIINNTTTIIGLGRFLELAMQCVEESAAERPTMSEVVKAIESILQNDGINTNTTSASSSATDFGTSKTAPRHPYNDPIPKKDPNDSNAFDYSGGYTLSAKVEPK 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 386987 395347 - Maker00033149 Lcy5g0015 631830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0015 926 Gene3D Phosphorylase Kinase; domain 1 565 666 - -
Lcy5g0015 926 Pfam Protein tyrosine and serine/threonine kinase 592 861 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0015 926 Gene3D Ribonuclease Inhibitor 53 363 IPR032675 -
Lcy5g0015 926 Gene3D Transferase(Phosphotransferase) domain 1 667 890 - -
Lcy5g0015 926 Pfam Leucine rich repeat N-terminal domain 55 86 IPR013210 -
Lcy5g0015 926 SUPERFAMILY Protein kinase-like (PK-like) 576 877 IPR011009 -
Lcy5g0015 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0015 926 FunFam Leucine-rich repeat protein kinase family protein 188 283 - -
Lcy5g0015 926 MobiDBLite consensus disorder prediction 871 890 - -
Lcy5g0015 926 FunFam Leucine-rich repeat protein kinase family protein 560 666 - -
Lcy5g0015 926 SUPERFAMILY L domain-like 66 347 - -
Lcy5g0015 926 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 667 879 - -
Lcy5g0015 926 CDD STKc_IRAK 597 865 - -
Lcy5g0015 926 ProSitePatterns Protein kinases ATP-binding region signature. 597 619 IPR017441 GO:0005524(InterPro)
Lcy5g0015 926 MobiDBLite consensus disorder prediction 871 912 - -
Lcy5g0015 926 Pfam Leucine Rich Repeat 289 312 IPR001611 GO:0005515(InterPro)
Lcy5g0015 926 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515(InterPro)
Lcy5g0015 926 SMART serkin_6 591 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0015 926 PANTHER RECEPTOR-LIKE PROTEIN 55 68 863 - -
Lcy5g0015 926 ProSiteProfiles Protein kinase domain profile. 591 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0015 926 FunFam Leucine-rich repeat family protein 52 187 - -
Lcy5g0015 926 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0876 Lcy-Chr11:26002677 Lcy5g0015 Lcy-Chr5:386987 0 dispersed
Lcy1g1635 Lcy-Chr1:16732750 Lcy5g0015 Lcy-Chr5:386987 5.81E-102 dispersed
Lcy5g0015 Lcy-Chr5:386987 Lcy9g1020 Lcy-Chr9:33629571 0 dispersed
Lcy1g0951 Lcy-Chr1:8328528 Lcy5g0015 Lcy-Chr5:386987 8.64E-75 wgd
Lcy11g0006 Lcy-Chr11:57262 Lcy5g0015 Lcy-Chr5:386987 2.68E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65893 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0015 - - - 0.0