Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0028 | ATGGTTTCGTCCCAATTTTGTGGCTTGACCAAGACTAGCAAGAGCAACACGATTCGAAGTCAGCATCTTTTACCTACAAACACTATCGATTGTGCATCTCTTGATTCTGTTAATCTGGATTTCTCTGATGTATTTGGCTCCATATCATTTCATGCCCCAACTGAAGTGGATACTGTTGATTTAGATTTTCATGTATGCCATGAAGATTCACGTGAGCTTATATATGATGATCCTGAAGTTATTTACAACCGATCTCATTCTTTGGTTGGTCCCTCTTCTTGTGCAAGTCAAACCCTTAAGCTAAGCAAACTAACTATTTCCGAGACCAAGGATTCAAGGGAATTAGTTGCATGTATCAGCAAGGAGACTAACAGCAAACTTCAAGAACATTCAAGTGGTTCTTTTATTGATAGAACTCTTGAAGATCTTGATAGAGGTTACATGAAAGTTGAGAGTGTAGGGATTGATGACTTCGAAGTTCTCAAGGTTGTTGGGCAGGGTGCATTTGCTAAGGTTTATCAGGTGAGGCGAAAGGGTACGTTGGAGATATATGCAATGAAGGTTATGCGAAAGGACAAGATAATGGAGAAGAACCATGTTGAATACATGAAAGCCGAGAGGGATATTTTAACAAAAACTGACCATCCATTCATTGTCCAGCTAAGATACTCATTCCAGACAAAATACAGGCTATATCTTGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTTTATCACCACGGGCTTTTCAGGGAAGATCTTGCTCGTATTTATGCTGCCGAGATTGTTTCGGCTGTTTCTCATCTCCATTCAAATGGCATAATGCACAGGGACCTAAAACCTGAAAATATTTTACTGGATGACCTTGGCCATATTATGTTGACTGATTTTGGTCTGGCGAAACGGTTTGAAGAGAATACAAGATCGAATTCTATGTGTGGAACACTAGAATATATGTCACCGGAAATAGTTCTTGGAAAAGGCCACGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTATTATTTGAAATGCTTACTGGGAAGCCTCCTTTTATTGGGAATCGAGAAAAAGTACAACAAAAGATAGTGAAGGACAAGATCAAGCTGCCAGCATATTTGTCTAGTGAAGCACATTCTCTTTTGAAAGGGCTGCTTCAAAAGGAGGCGGGTAAGCGATTGGGCAGTGGTCCTACGGGAAGCGAGGAAATCAAACGCCACAAGTGGTTCAAGCCAATCAATTGGAAGAAATTGGAGAAGCGGGAAATCCAACCAAGCTTTCGGCCTGAAGTAGCTGGGAAACACTGCGTTGCCAACTTTGAGAAGCGCTGGACTGAAATGCCACTTGTTGATTCCCCGGTTGCCAGCCCTAAAGCCGAAGGAAACCCCTTCATCGGCTTTAGCTATGTAAAACCCGCAGCCTCATTTCTCAACCTCAACAAAGATACACCCATCTATTGA | 1470 | 41.84 | MVSSQFCGLTKTSKSNTIRSQHLLPTNTIDCASLDSVNLDFSDVFGSISFHAPTEVDTVDLDFHVCHEDSRELIYDDPEVIYNRSHSLVGPSSCASQTLKLSKLTISETKDSRELVACISKETNSKLQEHSSGSFIDRTLEDLDRGYMKVESVGIDDFEVLKVVGQGAFAKVYQVRRKGTLEIYAMKVMRKDKIMEKNHVEYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDDLGHIMLTDFGLAKRFEENTRSNSMCGTLEYMSPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFIGNREKVQQKIVKDKIKLPAYLSSEAHSLLKGLLQKEAGKRLGSGPTGSEEIKRHKWFKPINWKKLEKREIQPSFRPEVAGKHCVANFEKRWTEMPLVDSPVASPKAEGNPFIGFSYVKPAASFLNLNKDTPIY | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 472393 | 476167 | + | Maker00033140 | Lcy5g0028 | 631843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0028 | 489 | ProSitePatterns | Protein kinases ATP-binding region signature. | 164 | 187 | IPR017441 | GO:0005524(InterPro) | |
Lcy5g0028 | 489 | FunFam | Non-specific serine/threonine protein kinase | 238 | 432 | - | - | |
Lcy5g0028 | 489 | FunFam | Non-specific serine/threonine protein kinase | 155 | 261 | - | - | |
Lcy5g0028 | 489 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 414 | 482 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0028 | 489 | SUPERFAMILY | Protein kinase-like (PK-like) | 155 | 471 | IPR011009 | - | |
Lcy5g0028 | 489 | ProSiteProfiles | Intein N-terminal splicing motif profile. | 118 | 219 | IPR006141 | GO:0016539(InterPro) | |
Lcy5g0028 | 489 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 432 | - | - | |
Lcy5g0028 | 489 | Pfam | Protein kinase C terminal domain | 435 | 472 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0028 | 489 | ProSiteProfiles | Protein kinase domain profile. | 158 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0028 | 489 | CDD | STKc_AGC | 164 | 413 | IPR045270 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Lcy5g0028 | 489 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0028 | 489 | SMART | serkin_6 | 158 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0028 | 489 | SMART | pkinase_C_6 | 414 | 474 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0028 | 489 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 125 | 478 | - | - | |
Lcy5g0028 | 489 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 454 | - | - | |
Lcy5g0028 | 489 | Pfam | Protein kinase domain | 158 | 413 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0614 | Lcy-Chr2:5249331 | Lcy5g0028 | Lcy-Chr5:472393 | 3.37E-165 | dispersed | |
Lcy2g0938 | Lcy-Chr2:8673721 | Lcy5g0028 | Lcy-Chr5:472393 | 1.18E-55 | dispersed | |
Lcy5g0028 | Lcy-Chr5:472393 | Lcy8g1859 | Lcy-Chr8:44891114 | 3.22E-54 | dispersed | |
Lcy5g0028 | Lcy-Chr5:472393 | Lcy4g0413 | Lcy-Chr4:5030181 | 1.38E-57 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65896 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0028 | K04688 | - | mdm:103423523 | 715.301 |