Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0028 ATGGTTTCGTCCCAATTTTGTGGCTTGACCAAGACTAGCAAGAGCAACACGATTCGAAGTCAGCATCTTTTACCTACAAACACTATCGATTGTGCATCTCTTGATTCTGTTAATCTGGATTTCTCTGATGTATTTGGCTCCATATCATTTCATGCCCCAACTGAAGTGGATACTGTTGATTTAGATTTTCATGTATGCCATGAAGATTCACGTGAGCTTATATATGATGATCCTGAAGTTATTTACAACCGATCTCATTCTTTGGTTGGTCCCTCTTCTTGTGCAAGTCAAACCCTTAAGCTAAGCAAACTAACTATTTCCGAGACCAAGGATTCAAGGGAATTAGTTGCATGTATCAGCAAGGAGACTAACAGCAAACTTCAAGAACATTCAAGTGGTTCTTTTATTGATAGAACTCTTGAAGATCTTGATAGAGGTTACATGAAAGTTGAGAGTGTAGGGATTGATGACTTCGAAGTTCTCAAGGTTGTTGGGCAGGGTGCATTTGCTAAGGTTTATCAGGTGAGGCGAAAGGGTACGTTGGAGATATATGCAATGAAGGTTATGCGAAAGGACAAGATAATGGAGAAGAACCATGTTGAATACATGAAAGCCGAGAGGGATATTTTAACAAAAACTGACCATCCATTCATTGTCCAGCTAAGATACTCATTCCAGACAAAATACAGGCTATATCTTGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTTTATCACCACGGGCTTTTCAGGGAAGATCTTGCTCGTATTTATGCTGCCGAGATTGTTTCGGCTGTTTCTCATCTCCATTCAAATGGCATAATGCACAGGGACCTAAAACCTGAAAATATTTTACTGGATGACCTTGGCCATATTATGTTGACTGATTTTGGTCTGGCGAAACGGTTTGAAGAGAATACAAGATCGAATTCTATGTGTGGAACACTAGAATATATGTCACCGGAAATAGTTCTTGGAAAAGGCCACGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTATTATTTGAAATGCTTACTGGGAAGCCTCCTTTTATTGGGAATCGAGAAAAAGTACAACAAAAGATAGTGAAGGACAAGATCAAGCTGCCAGCATATTTGTCTAGTGAAGCACATTCTCTTTTGAAAGGGCTGCTTCAAAAGGAGGCGGGTAAGCGATTGGGCAGTGGTCCTACGGGAAGCGAGGAAATCAAACGCCACAAGTGGTTCAAGCCAATCAATTGGAAGAAATTGGAGAAGCGGGAAATCCAACCAAGCTTTCGGCCTGAAGTAGCTGGGAAACACTGCGTTGCCAACTTTGAGAAGCGCTGGACTGAAATGCCACTTGTTGATTCCCCGGTTGCCAGCCCTAAAGCCGAAGGAAACCCCTTCATCGGCTTTAGCTATGTAAAACCCGCAGCCTCATTTCTCAACCTCAACAAAGATACACCCATCTATTGA 1470 41.84 MVSSQFCGLTKTSKSNTIRSQHLLPTNTIDCASLDSVNLDFSDVFGSISFHAPTEVDTVDLDFHVCHEDSRELIYDDPEVIYNRSHSLVGPSSCASQTLKLSKLTISETKDSRELVACISKETNSKLQEHSSGSFIDRTLEDLDRGYMKVESVGIDDFEVLKVVGQGAFAKVYQVRRKGTLEIYAMKVMRKDKIMEKNHVEYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDDLGHIMLTDFGLAKRFEENTRSNSMCGTLEYMSPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFIGNREKVQQKIVKDKIKLPAYLSSEAHSLLKGLLQKEAGKRLGSGPTGSEEIKRHKWFKPINWKKLEKREIQPSFRPEVAGKHCVANFEKRWTEMPLVDSPVASPKAEGNPFIGFSYVKPAASFLNLNKDTPIY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 472393 476167 + Maker00033140 Lcy5g0028 631843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0028 489 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524(InterPro)
Lcy5g0028 489 FunFam Non-specific serine/threonine protein kinase 238 432 - -
Lcy5g0028 489 FunFam Non-specific serine/threonine protein kinase 155 261 - -
Lcy5g0028 489 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 482 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0028 489 SUPERFAMILY Protein kinase-like (PK-like) 155 471 IPR011009 -
Lcy5g0028 489 ProSiteProfiles Intein N-terminal splicing motif profile. 118 219 IPR006141 GO:0016539(InterPro)
Lcy5g0028 489 Gene3D Transferase(Phosphotransferase) domain 1 238 432 - -
Lcy5g0028 489 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0028 489 ProSiteProfiles Protein kinase domain profile. 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0028 489 CDD STKc_AGC 164 413 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Lcy5g0028 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0028 489 SMART serkin_6 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0028 489 SMART pkinase_C_6 414 474 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0028 489 PANTHER RIBOSOMAL PROTEIN S6 KINASE 125 478 - -
Lcy5g0028 489 Gene3D Phosphorylase Kinase; domain 1 155 454 - -
Lcy5g0028 489 Pfam Protein kinase domain 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0614 Lcy-Chr2:5249331 Lcy5g0028 Lcy-Chr5:472393 3.37E-165 dispersed
Lcy2g0938 Lcy-Chr2:8673721 Lcy5g0028 Lcy-Chr5:472393 1.18E-55 dispersed
Lcy5g0028 Lcy-Chr5:472393 Lcy8g1859 Lcy-Chr8:44891114 3.22E-54 dispersed
Lcy5g0028 Lcy-Chr5:472393 Lcy4g0413 Lcy-Chr4:5030181 1.38E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65896 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0028 K04688 - mdm:103423523 715.301