Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0033 ATGCTTTTCAAACTATTCCTCCTTCTTATCTTAGCTCCTGCTTCCGTTTATGCCTTGGACACTGTTTTCAACGATGACGTTCTGGGGTTGATAGTATTTAAAGCTGGCCTTCGAGATCCCATGGGTAAACTCGTCACATGGAATGAAGACGATGAAAATCCCTGCAACTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGCTCGTCCTTGATGGATTCTCTTTGTCTGGGCACATCGATCGTGGACTCCTCAGGCTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACAATTAACTCTGCTCTTGCTCATCTTACAAGTTTGCAAGTTATTGATTTGAGTGACAACAGTTTATCTGGACCCATTCCTGAACAACTTTTCCTGCAATGTGGCTCTATAAGAGTTATTTCATTTGCCAGAAACAACCTCACAGGAAATATCCCTCAATCCTTAACCTCTTGCTTCTCTCTTGAGGTTCTCAACTTCTCCTCCAACCACCTCTCTGGGAAATTGCCTTCTGGGTTATGGTATTTAAGGGGACTTCAGTCTCTGGATTTCTCAGACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTATACGATTTGAGATTTGTTAACCTACAGAAGAATCGATTTTCTGGAAGGCTTCCTGAGGACATTGGTGGCTGCTTGCTTTTAAAATCAATCGATTTTAGTGAGAATATCCTTTCTGGGGGTCTTCCGGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTCAAAAATCTTGAGACTTTAGATCTTTCTACCAATAACTTTTCTGGTCAGGTACCGAGTTCAATAGGCAACCTCCAATTGTTGAAGAAGTTTAATGTATCCATGAACTATTTTACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAGCCTCTTGAGTATTGATGCCAGCCACAATCATTTGACTGGCAGTCTCCCTTCATGGATTTTTAGGGCAGTTATGCCAAGTGTTCCACTTTCTTCCTACAGACTGGAAGAAAACCTTTCATTTCCAACCTCTTTTGGCGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCAAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAATATATCAAGAAACCATCTCGTGGGTTCTATTCCAGGGAGCATCGGTGAACTAAAATCAGTATATACTCTTGACTTCAGTGACAATCAATTAAATGGAAGTATTCCTGCTGAAATTGGAGGAGCTATCTCACTCAAGGATTTGAGGCTGGAGAAGAACTTCCTCACTGGGGAAATTCCAAACAAGATTGACAAATGCTCGTTGTTAACATCATTGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCCGTTGCGAATCTCTCCAACCTTGAAAACGTAGACTTATCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCTCACCTCCTCTTCTTCAACATCTCCCACAATCACCTTGAGGGAGAACTCCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAATCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGTCCCTCCGTGCATCCAAAACCTATAGTCCTGAACCCAAATTCTTCTGATAGCAACGGCAATTCCCCCTCCCACAAGCATCATCATGAAATCATACTCAGCATATCTTCCATTATAGCTATTGGTGCAGCTTCATTTATCTTACTTGGTGTGGTAGCTGTCACTATCCTTAATATACGTGCAAGGTCCTCACAGTCGCGTTCTGCTGCTCTAGCATTATCTGCTGGGGAGGATTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCGTCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGTGCTCAAGCATTGCTGAACAAGGACTGTGAACTTGGTCGAGGTGGATTTGGAGTTGTTTACAGAACGGTGCTTCGAGATGAGTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGTTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGGTGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGAATGGCCAAAGGATTGGCTTATTTGCACCATAATAATATAATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTGGGGGATTATGGGCTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGTGCTTTAGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAATGCGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCAATCAAACTTCCGTGTTGAAGAGGCCATTCCTGTAATGAAACTGGGTTTGATATGTGCATCTCAAGTACCGTCCAACAGGCCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGCCGATGAGGAGTTGGAATGA 2877 42.82 MLFKLFLLLILAPASVYALDTVFNDDVLGLIVFKAGLRDPMGKLVTWNEDDENPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALAHLTSLQVIDLSDNSLSGPIPEQLFLQCGSIRVISFARNNLTGNIPQSLTSCFSLEVLNFSSNHLSGKLPSGLWYLRGLQSLDFSDNLLEGQIPPGIQNLYDLRFVNLQKNRFSGRLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLETLDLSTNNFSGQVPSSIGNLQLLKKFNVSMNYFTGNLPESMANCNSLLSIDASHNHLTGSLPSWIFRAVMPSVPLSSYRLEENLSFPTSFGGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGSIGELKSVYTLDFSDNQLNGSIPAEIGGAISLKDLRLEKNFLTGEIPNKIDKCSLLTSLILSHNNLTGSIPAAVANLSNLENVDLSFNKLSGSLPKELTNLSHLLFFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDSNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALALSAGEDFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYRTVLRDECLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHGGTGDNCLSWRQRFKIVLGMAKGLAYLHHNNIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDEGTVEQCVDERLQSNFRVEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEADEELE 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 497499 501701 + Maker00033085 Lcy5g0033 631848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0033 958 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 276 947 IPR051564 GO:0016020(PANTHER)
Lcy5g0033 958 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 303 571 - -
Lcy5g0033 958 Gene3D Transferase(Phosphotransferase) domain 1 752 957 - -
Lcy5g0033 958 SUPERFAMILY L domain-like 41 352 - -
Lcy5g0033 958 Pfam Protein tyrosine and serine/threonine kinase 677 943 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0033 958 CDD STKc_IRAK 681 947 - -
Lcy5g0033 958 SUPERFAMILY Protein kinase-like (PK-like) 678 947 IPR011009 -
Lcy5g0033 958 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lcy5g0033 958 SUPERFAMILY RNI-like 254 560 - -
Lcy5g0033 958 SMART LRR_typ_2 211 235 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 401 425 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 90 113 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 521 545 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 114 138 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 187 210 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 497 520 IPR003591 -
Lcy5g0033 958 SMART LRR_typ_2 283 307 IPR003591 -
Lcy5g0033 958 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Lcy5g0033 958 SMART LRR_sd22_2 114 129 - -
Lcy5g0033 958 SMART LRR_sd22_2 497 523 - -
Lcy5g0033 958 SMART LRR_sd22_2 283 309 - -
Lcy5g0033 958 SMART LRR_sd22_2 187 213 - -
Lcy5g0033 958 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524(InterPro)
Lcy5g0033 958 Gene3D Phosphorylase Kinase; domain 1 664 751 - -
Lcy5g0033 958 Pfam Leucine Rich Repeat 333 353 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 476 497 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 429 448 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 380 401 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 116 135 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Pfam Leucine Rich Repeat 263 283 IPR001611 GO:0005515(InterPro)
Lcy5g0033 958 Gene3D Ribonuclease Inhibitor 362 570 IPR032675 -
Lcy5g0033 958 ProSiteProfiles Protein kinase domain profile. 675 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0033 958 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Lcy5g0033 958 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 669 751 - -
Lcy5g0033 958 Gene3D Ribonuclease Inhibitor 284 359 IPR032675 -
Lcy5g0033 958 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 24 302 - -
Lcy5g0033 958 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 752 953 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2150 Lcy-Chr10:45502300 Lcy5g0033 Lcy-Chr5:497499 1.07E-213 dispersed
Lcy11g1159 Lcy-Chr11:33979585 Lcy5g0033 Lcy-Chr5:497499 3.81E-103 dispersed
Lcy5g0033 Lcy-Chr5:497499 Lcy7g1082 Lcy-Chr7:11576919 2.68E-175 dispersed
Lcy1g0973 Lcy-Chr1:8538409 Lcy5g0033 Lcy-Chr5:497499 7.75E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65897 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0033 - - - 0.0