Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0042 TGCTTGTTCAACTATGGAAATAAGAATCAAGCACCAGACTCCAAGTTAGATAACGACCTCGTGGATTTGTGTTATGGCTTTCCTTTCTCGCGGATAAAGTTTCCTCGGAATTTTTGGCGTCAACTTATGAGTTGTAACGAGAAGAATAGAGGGGGAGATGATAGGGAAACCGAGCAGCCAGTTTTGAGGAACTCTGTTGAGGCAGAACGGAGACCGGTCATCCAAAACGGATCCATAACGGCCCAACAGTTGACGATAGATGATAATCTTCTCGTTGACCCAAAATTACTGTTTATTGGATCGAAGATTGGCGAAGGTGCCCATGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGGGCATCACTTGAGAATCGTTTTGCCCGTGAAGTTAATATGATGTCTCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAACTATTACCAGGAATGTCACTCAGGAAGTATCTGACGAGTAATCGTAAGCAACAGCTGGACCCTCGGATGGCGATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCCAATGGGATTATACATAGAGATCTGAAACCTGACAATTTGTTGCTTACGGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACCTATCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAGGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGCGACATACCTCCCAATCTAGCATTTATAGTACAGTCATGTTGGGTTGAAGATCCTAACATGAGGCCGAGCTTCAGCCAGATCATCCGCATGCTTAACGAATATCTGTTTACACTCCCACCTCCTTCACCATCTTCACCAGCATCCAATACAACAGAGACAGCAACGACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTATTTGCTGCTAAGAAGGCTAAGAACTCACAATAA 1248 44.23 CLFNYGNKNQAPDSKLDNDLVDLCYGFPFSRIKFPRNFWRQLMSCNEKNRGGDDRETEQPVLRNSVEAERRPVIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERASLENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLTSNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPNLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPPPSPSSPASNTTETATTSNGAITEFSARARGKFGFLRQLFAAKKAKNSQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 567813 575167 - Maker00033152 Lcy5g0042 631857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0042 415 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 MobiDBLite consensus disorder prediction 368 387 - -
Lcy5g0042 415 Pfam Protein tyrosine and serine/threonine kinase 99 358 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 FunFam Kinase suppressor of Ras 1 86 176 - -
Lcy5g0042 415 Gene3D Phosphorylase Kinase; domain 1 85 176 - -
Lcy5g0042 415 ProSiteProfiles Protein kinase domain profile. 97 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 ProSitePatterns Protein kinases ATP-binding region signature. 103 124 IPR017441 GO:0005524(InterPro)
Lcy5g0042 415 SUPERFAMILY Protein kinase-like (PK-like) 96 379 IPR011009 -
Lcy5g0042 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 PANTHER SERINE-THREONINE PROTEIN KINASE 73 360 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy5g0042 415 SMART serkin_6 97 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0042 415 FunFam serine/threonine-protein kinase HT1 178 380 - -
Lcy5g0042 415 Gene3D Transferase(Phosphotransferase) domain 1 180 389 - -
Lcy5g0042 415 CDD STKc_MAP3K-like 103 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0161 Lcy-Chr10:2211542 Lcy5g0042 Lcy-Chr5:567813 6.62E-143 dispersed
Lcy4g1553 Lcy-Chr4:39289690 Lcy5g0042 Lcy-Chr5:567813 1.46E-45 dispersed
Lcy5g0042 Lcy-Chr5:567813 Lcy5g1875 Lcy-Chr5:41596723 1.14E-69 dispersed
Lcy5g0042 Lcy-Chr5:567813 Lcy2g0117 Lcy-Chr2:885342 7.01E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65899 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0042 - - - 0.0