Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0042 | TGCTTGTTCAACTATGGAAATAAGAATCAAGCACCAGACTCCAAGTTAGATAACGACCTCGTGGATTTGTGTTATGGCTTTCCTTTCTCGCGGATAAAGTTTCCTCGGAATTTTTGGCGTCAACTTATGAGTTGTAACGAGAAGAATAGAGGGGGAGATGATAGGGAAACCGAGCAGCCAGTTTTGAGGAACTCTGTTGAGGCAGAACGGAGACCGGTCATCCAAAACGGATCCATAACGGCCCAACAGTTGACGATAGATGATAATCTTCTCGTTGACCCAAAATTACTGTTTATTGGATCGAAGATTGGCGAAGGTGCCCATGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGGGCATCACTTGAGAATCGTTTTGCCCGTGAAGTTAATATGATGTCTCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAACTATTACCAGGAATGTCACTCAGGAAGTATCTGACGAGTAATCGTAAGCAACAGCTGGACCCTCGGATGGCGATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCCAATGGGATTATACATAGAGATCTGAAACCTGACAATTTGTTGCTTACGGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACCTATCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAGGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGCGACATACCTCCCAATCTAGCATTTATAGTACAGTCATGTTGGGTTGAAGATCCTAACATGAGGCCGAGCTTCAGCCAGATCATCCGCATGCTTAACGAATATCTGTTTACACTCCCACCTCCTTCACCATCTTCACCAGCATCCAATACAACAGAGACAGCAACGACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTATTTGCTGCTAAGAAGGCTAAGAACTCACAATAA | 1248 | 44.23 | CLFNYGNKNQAPDSKLDNDLVDLCYGFPFSRIKFPRNFWRQLMSCNEKNRGGDDRETEQPVLRNSVEAERRPVIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERASLENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLTSNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPNLAFIVQSCWVEDPNMRPSFSQIIRMLNEYLFTLPPPSPSSPASNTTETATTSNGAITEFSARARGKFGFLRQLFAAKKAKNSQ | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 567813 | 575167 | - | Maker00033152 | Lcy5g0042 | 631857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0042 | 415 | PRINTS | Tyrosine kinase catalytic domain signature | 211 | 229 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | PRINTS | Tyrosine kinase catalytic domain signature | 285 | 307 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | PRINTS | Tyrosine kinase catalytic domain signature | 329 | 351 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 186 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | MobiDBLite | consensus disorder prediction | 368 | 387 | - | - | |
Lcy5g0042 | 415 | Pfam | Protein tyrosine and serine/threonine kinase | 99 | 358 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | FunFam | Kinase suppressor of Ras 1 | 86 | 176 | - | - | |
Lcy5g0042 | 415 | Gene3D | Phosphorylase Kinase; domain 1 | 85 | 176 | - | - | |
Lcy5g0042 | 415 | ProSiteProfiles | Protein kinase domain profile. | 97 | 362 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | ProSitePatterns | Protein kinases ATP-binding region signature. | 103 | 124 | IPR017441 | GO:0005524(InterPro) | |
Lcy5g0042 | 415 | SUPERFAMILY | Protein kinase-like (PK-like) | 96 | 379 | IPR011009 | - | |
Lcy5g0042 | 415 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 217 | 229 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 73 | 360 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lcy5g0042 | 415 | SMART | serkin_6 | 97 | 362 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g0042 | 415 | FunFam | serine/threonine-protein kinase HT1 | 178 | 380 | - | - | |
Lcy5g0042 | 415 | Gene3D | Transferase(Phosphotransferase) domain 1 | 180 | 389 | - | - | |
Lcy5g0042 | 415 | CDD | STKc_MAP3K-like | 103 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0161 | Lcy-Chr10:2211542 | Lcy5g0042 | Lcy-Chr5:567813 | 6.62E-143 | dispersed | |
Lcy4g1553 | Lcy-Chr4:39289690 | Lcy5g0042 | Lcy-Chr5:567813 | 1.46E-45 | dispersed | |
Lcy5g0042 | Lcy-Chr5:567813 | Lcy5g1875 | Lcy-Chr5:41596723 | 1.14E-69 | dispersed | |
Lcy5g0042 | Lcy-Chr5:567813 | Lcy2g0117 | Lcy-Chr2:885342 | 7.01E-144 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65899 | None | None | None | None | Lcy | PK |
Pathway information
