Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0043 ATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAATAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTTGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCATTTGTTCCTCGTCAATCGTGGAGGATTTGTCTGTATTGGTGTAATGTCGCTGGATGGAGATGACCGGAAAAGTAGAGAAGAAAATAGAAAGGGCATTTTAGCGTTTGGAGGCGATCCTGGGCTGAATCGAGTGGAACTGGGGCGGACCGGGACAGCAGGGGCTGAACGGAGGCGGAAGGAACTCGGCCCACATGAGTGGGCTGAGTGGTCGGCCTCGACCTCCGGAGTTGAGCCAAGCCCAATTCGCTGTCTTCCCACCCAAGCCCAACCAGATCCATTTGTTGAAAAGATATGGTCCCACCCACCAAAGCTAGAAGCGTAG 813 56.58 MSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNNHPVYRGVRMRNLGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSHLFLVNRGGFVCIGVMSLDGDDRKSREENRKGILAFGGDPGLNRVELGRTGTAGAERRRKELGPHEWAEWSASTSGVEPSPIRCLPTQAQPDPFVEKIWSHPPKLEA 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 584555 587525 - Maker00033267 Lcy5g0043 631858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0043 270 MobiDBLite consensus disorder prediction 214 229 - -
Lcy5g0043 270 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Lcy5g0043 270 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 MobiDBLite consensus disorder prediction 27 48 - -
Lcy5g0043 270 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 MobiDBLite consensus disorder prediction 1 16 - -
Lcy5g0043 270 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 139 IPR051032 -
Lcy5g0043 270 MobiDBLite consensus disorder prediction 213 251 - -
Lcy5g0043 270 CDD AP2 48 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 SMART rav1_2 47 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 MobiDBLite consensus disorder prediction 1 50 - -
Lcy5g0043 270 Pfam AP2 domain 46 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0043 270 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2269 Lcy-Chr4:49178679 Lcy5g0043 Lcy-Chr5:584555 1.05E-54 dispersed
Lcy5g0043 Lcy-Chr5:584555 Lcy6g1164 Lcy-Chr6:13456833 1.29E-98 dispersed
Lcy1g1631 Lcy-Chr1:16670544 Lcy5g0043 Lcy-Chr5:584555 2.83E-07 transposed
Lcy4g1764 Lcy-Chr4:43672976 Lcy5g0043 Lcy-Chr5:584555 3.23E-10 transposed
Lcy6g0241 Lcy-Chr6:2123257 Lcy5g0043 Lcy-Chr5:584555 3.54E-07 transposed
Lcy7g0341 Lcy-Chr7:2864928 Lcy5g0043 Lcy-Chr5:584555 4.82E-123 transposed
Lcy7g0425 Lcy-Chr7:3667288 Lcy5g0043 Lcy-Chr5:584555 1.53E-81 transposed
Lcy9g1154 Lcy-Chr9:35551447 Lcy5g0043 Lcy-Chr5:584555 3.91E-122 transposed
Lcy1g0975 Lcy-Chr1:8570647 Lcy5g0043 Lcy-Chr5:584555 2.17E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20037 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0043 K09286 - csv:101206242 183.341