Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0069 ATGGGAAAAAGCCACAACTTTCTGAGTGAATTTCAGGCACACCCACTTCAGTTCATGCAGATTCTTGCACCAAAAACAGTTGATTGGTGCTCTAAATCACCCAATAAGAACAGAAAATTGAAGAATCGACAATGGAGAAGCTGTTCTTCATGCCTCATTGCTCTCTTTTTTGCTCATCTTTTGGCCTCTTCTCTTCAACCGGTCGCCGCCCAGATGTGGGATGGAGTGGCTGTTACAGAAGGGGATTTTCAAGCTCTTCAAGCTATAAAGCATGAACTCATTGATCTGAAAGGAGCTTTACACAGCTGGAATGGCAGTAATGGAGCTTGTTCCGGGCAGTGGGCAGGAATCAAGTGTGTGAAGGGGCAGGTCATTGCTATACAGCTTCCATGGAAGGCTCTTGCCGGCCGGATTTCCGACCGGATTGGGCAGCTCCGGGAACTTCGGAAGCTCAGCCTCCACGACAATGTGATCTCCGGCGCCATCCCTCGGTCGCTCGGGTACCTTCCGAATCTCAGAGGAATTTATCTTTTCAACAACAGATTTTCAGGTTCTATTCCTCCTACAATTGGTAATCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCAGTGGAGAAATTCCTTCTGGTCTAGCTAATTCTACCAAATTGATTAGAGTTAATCTGAGCTACAATTCATTGTCGGGATCTATTCCTAGTAGTTTTATGCAGTCGTTTTCTCTTAGAATTCTTGCTCTTCAGCACAATAACATTTCTGGGACAGCCCCAGATTCTTGGGGTGGTTCTGCAAACAGAACTTGCCCACTTGAGGTTTTAACGCTTGATCATAATGCTATATCTGGAGCAATTCCAGCTTCATTGAGTAAATTGGAATGGCTTCAAGAGATTTCCGTTAGTGAAAATAAGATCTCTGGGGCTATACCAGGTGAAATCGGCAGGCTGAAGAGGCTTCGCCTTTTGGATTTGTCGAACAACGCCATTAATGGCAGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTCGAGTTATTGAATGTTGAAAATAATCGCCTCGAAAGCCAGATTCCAGGAGATATTGATAGATTACATAATCTCTCAGTGGTTAAGCTTGGGAAGAATCGTTTTAGTGGAGAGATTCCTGCAAGTTTTGGGAACATTTCTGCTGTTAGTCAACTTGATTTCTCAGAAAATAACTTCACAGGACAGATTCCAACCTCATTGACCCGTTTGTTGAATCTAACGTCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTCCCAATTCTCCTATCAAATAAGTTCAATGCGAGCTCTTTTGTTGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGTCTACCTGCATCCAACCCGCAGAATATTACAACTCCATCGATTGAGGTCCCGAAACTGCATCGCCACCGCAGACTTAGTGTAAAGGACATAATTCTGATAGCGGCTGGAGCTCTGTTGGTGCTGCTACTTCTTCTTTGCTCGATCTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCTAAAAAGAATGAGAAAACAACAACCAAGCAAGCTGCTGCTGCGAGGAGTGTCGAGAAGGCAGCACCGGGCAGTACTGAAGTTGGGGCGGGTGAAGCCGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGATCTTCTGTGTGCAACTGCGGAGATCATGGGTAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGCAATGAAGTTGCAGTGAAAAGATTGAGGGAAAAGACAACCAAAGGGCAGAAGGAATTCGAAACTGAAGTTGCAGGACTCGGAAAGATTCGACACCCGAATCTACTTGCTCTTAGAGCCTACTACCTAGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGTGGGCCGGAAACCACTGTCGATTGGCCGACAAGGATGAAGATAGTGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTTATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGATGATCAGACCAATGCTCGTATTGCAGATTTCGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAGACCACAGCAAAGACAGATGTTTACAGCCTTGGAGTCATAATATTGGAACTTTTGACAGGAAAATCTCCTGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCTTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACACCAGATATTGGTGATGAACTGTTGAACACTTTGAAACTAGCCCTGCATTGTGTGGATCCCTCGCCAGCAGCTCGGCCTGACGTTCAGCAAATACTCCAGCAACTGGAGGAAATCAAGGCCTCTACTTCCGGCGACGATGGAGCCAAAAATCAACCAGCAAATGAATAA 2577 45.05 MGKSHNFLSEFQAHPLQFMQILAPKTVDWCSKSPNKNRKLKNRQWRSCSSCLIALFFAHLLASSLQPVAAQMWDGVAVTEGDFQALQAIKHELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNVISGAIPRSLGYLPNLRGIYLFNNRFSGSIPPTIGNLPLLQTLDLSNNLLSGEIPSGLANSTKLIRVNLSYNSLSGSIPSSFMQSFSLRILALQHNNISGTAPDSWGGSANRTCPLEVLTLDHNAISGAIPASLSKLEWLQEISVSENKISGAIPGEIGRLKRLRLLDLSNNAINGSFPSSFSNLSSLELLNVENNRLESQIPGDIDRLHNLSVVKLGKNRFSGEIPASFGNISAVSQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPILLSNKFNASSFVGNLQLCGFSTSTPCLPASNPQNITTPSIEVPKLHRHRRLSVKDIILIAAGALLVLLLLLCSILLCCLLSKRAAAKKNEKTTTKQAAAARSVEKAAPGSTEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIVIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTAKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTPDIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEIKASTSGDDGAKNQPANE 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 797078 800830 + Maker00033162 Lcy5g0069 631884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0069 858 PRINTS Leucine-rich repeat signature 317 330 - -
Lcy5g0069 858 PRINTS Leucine-rich repeat signature 196 209 - -
Lcy5g0069 858 Gene3D Transferase(Phosphotransferase) domain 1 648 855 - -
Lcy5g0069 858 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Lcy5g0069 858 Gene3D Ribonuclease Inhibitor 79 238 IPR032675 -
Lcy5g0069 858 Gene3D Phosphorylase Kinase; domain 1 576 647 - -
Lcy5g0069 858 SUPERFAMILY Protein kinase-like (PK-like) 574 842 IPR011009 -
Lcy5g0069 858 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 80 231 - -
Lcy5g0069 858 CDD STKc_IRAK 576 841 - -
Lcy5g0069 858 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 283 845 IPR052451 -
Lcy5g0069 858 SMART LRR_typ_2 341 365 IPR003591 -
Lcy5g0069 858 SMART LRR_typ_2 193 217 IPR003591 -
Lcy5g0069 858 SMART LRR_typ_2 145 169 IPR003591 -
Lcy5g0069 858 SMART LRR_typ_2 243 264 IPR003591 -
Lcy5g0069 858 SMART LRR_typ_2 317 340 IPR003591 -
Lcy5g0069 858 Pfam Leucine rich repeat 272 330 IPR001611 GO:0005515(InterPro)
Lcy5g0069 858 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Lcy5g0069 858 Pfam Leucine Rich Repeat 196 216 IPR001611 GO:0005515(InterPro)
Lcy5g0069 858 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Lcy5g0069 858 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
Lcy5g0069 858 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Lcy5g0069 858 Gene3D Ribonuclease Inhibitor 239 333 IPR032675 -
Lcy5g0069 858 Gene3D Ribonuclease Inhibitor 334 459 IPR032675 -
Lcy5g0069 858 FunFam Pollen receptor-like kinase 1 647 852 - -
Lcy5g0069 858 FunFam Leucine-rich repeat receptor-like protein kinase 556 646 - -
Lcy5g0069 858 ProSiteProfiles Protein kinase domain profile. 570 841 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0069 858 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 243 462 - -
Lcy5g0069 858 Pfam Protein tyrosine and serine/threonine kinase 574 838 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0069 858 MobiDBLite consensus disorder prediction 839 858 - -
Lcy5g0069 858 SUPERFAMILY L domain-like 106 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0069 Lcy-Chr5:797078 Lcy7g0488 Lcy-Chr7:4334786 1.04E-74 dispersed
Lcy9g1122 Lcy-Chr9:35142658 Lcy5g0069 Lcy-Chr5:797078 1.77E-40 dispersed
Lcy12g1429 Lcy-Chr12:32432512 Lcy5g0069 Lcy-Chr5:797078 1.31E-33 transposed
Lcy3g1403 Lcy-Chr3:40628038 Lcy5g0069 Lcy-Chr5:797078 2.95E-71 transposed
Lcy6g0303 Lcy-Chr6:2818578 Lcy5g0069 Lcy-Chr5:797078 2.98E-59 transposed
Lcy7g1037 Lcy-Chr7:11061369 Lcy5g0069 Lcy-Chr5:797078 2.63E-188 transposed
Lcy1g0980 Lcy-Chr1:8644986 Lcy5g0069 Lcy-Chr5:797078 1.86E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65900 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0069 - - - 0.0