Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0077 ATGAACGACACCGCCCCGCCGGCGAACATGGGCGCCGGATCTCCGCCATGGCTGAACACCGGCGACAACTCGTGGCAAATCACAGCCTCCACCCTCGTCGGACTTCAGAGCATGCCGGGCCTCGTAATCCTCTACGCCAGCATCGTCAAGAAGAAATGGGCCGTGAATTCAGCCTTCATGGCCCTTTACGCCTTCGCCGCCGTCCTAATCTGCTGGGTCGTCGTCGGCTACCGAATGGCCTTCGGAGATCAGCTGCTTCCGCTGTGGGGCAAAGGGATTCCGGCTCTGGCTCAAAGCTACCTAATCGACCAAGCCAACATCCCTGAAAGTGGGCACACGAGCAACGACGGAAGAGTAACGCCGAGAATCGAGCCCAATGTTCCGATGGCTTCGCTCGTGTATTTCCAGTTCACCTTCGCTGCGATTACTGTGATTTTACTTGCAGGCTCTGTTCTTGCGAGAATGAACATCAAAGCCTGGATGGCGTTCGTTCCTCTCTGGGTGATTTTCTCCTACACCGTCGGCGCCTTCACGATTTGGGGCGGAGGGTTTCTCTTTCAGTGGGGCGTCATCGATTATTCCGGCGGCTACGTGATCCATCTTTCTTCGGGGATTTCTGGTCTGACCGCCGCTTATTGGGTTGGGCCGAGGATTAAGAGCGATAGAGAGAGGTTTCCGCCGAATAACGTGCTGCTGATGTTGGCCGGAGCGGGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCGGTGCTGAATACGAACGTGAGCGCGGCGACGAGCCTGCTGGTGTGGACCATTTTGGATGTGGTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTAGCTTGCGTAACCCCTGGCGCAGGAGTTGTACAGACGTGGGCAGCTATTATAATGGGAATTCTGTCTGGGAGTATTCCATGGGTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTAGCAGGGATGTTGGGCGGGCTTCTAACAGGGCTTTTGGCGGAGCCCACGCTGTGCGAACTATACCTACCGATCCCCGACACTCGCGGTGCCTTTTACGGCAAAAACGGCGGCGTTCAGTTTTTGAAACAACTCGCCGGAGCCACCTTCATAATCGGATGGAACATCGTCTCCACGACCATTATACTCCTCTTTATTCGGCTGTTTATGCCGTTGAGAATGCCGGACGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCCTACGCTCTTTGGGGCGACGGCGAGAAATTCGATCCCCGAAGACACGGCAATGCGGCGGCCTGCGCCGAGGAAGGAACCGCCTCGCCTTATATCAACGGCGCCAGAGGAGTAACCATCAATTTGTGA 1464 56.22 MNDTAPPANMGAGSPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVVVGYRMAFGDQLLPLWGKGIPALAQSYLIDQANIPESGHTSNDGRVTPRIEPNVPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAFTIWGGGFLFQWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVVYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGILSGSIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGMLGGLLTGLLAEPTLCELYLPIPDTRGAFYGKNGGVQFLKQLAGATFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAACAEEGTASPYINGARGVTINL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 845300 850371 + Maker00033211 Lcy5g0077 631892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0077 487 FunFam Ammonium transporter 8 450 - -
Lcy5g0077 487 SUPERFAMILY Ammonium transporter 17 429 - -
Lcy5g0077 487 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy5g0077 487 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy5g0077 487 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005886(InterPro)
Lcy5g0077 487 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005886(InterPro)
Lcy5g0077 487 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005886(InterPro)
Lcy5g0077 487 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005886(InterPro)
Lcy5g0077 487 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005886(InterPro)
Lcy5g0077 487 PANTHER AMMONIUM TRANSPORTER MEP2 16 458 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Lcy5g0077 487 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy5g0077 487 Gene3D Ammonium transporter AmtB like domains 4 450 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0585 Lcy-Chr1:4982309 Lcy5g0077 Lcy-Chr5:845300 7.67E-186 dispersed
Lcy5g0077 Lcy-Chr5:845300 Lcy9g0424 Lcy-Chr9:11830104 1.07E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0077 K03320 - csv:101207321 883.248