Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0083 | ATGGATATGGATATCGACGAAAATTCGGCAGCCAAAGGAAAGGAAGGGCAAGGGAAGCTCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGCGTTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGACACGATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCTTTGAATGATGGAAAGAATGTATTTGTGGATAGGTGCAATCTTGAAATAGAGCAGCGTGCAGACTTTGTGAAACTTGGTGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCACAGCTCTGTATTTCTCGTTCGGTTAAGCGGACTGGTCATGAAGGGAATTTGTCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGGTTCACTCGCATAACCTTTTGCCACAATGAGACTGACGTTCAATCCGCTATAGACACGTACAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAACCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTGCTAAGACGTGTTCTAGTGCCAATACCATTAAGGATTCTCCAATTTCTCAAAGTACCCAGGAAAAGAGCTACTCTTGTGATAAAAAGGAAGAGTCTGCCTGCACAATGTTTAGCAATGTCGATAAAGAGTTAGAGAAAGGTGAAAATCCAGGTGTTAGATCCTTAGAAAAAAATATTTCTCAAAGTGATCCTCCAACTCTTGCATTTCCATCTATTTCGACATCAGATTTCAAGTTCAGCCATGAGAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAGGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTGATGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCAGCCAAGAAGAATATTACTTCGACCAAGTTTTTTACATTCGTAGGTGATATAACCAAACTCAATTCAGAAGGTGGATTGTGCTGCAATGTTATAGCCAATGCTGCAAACTGGAAGATACTGAATAAAGATATTTCGTGCAGGCGACTGAAACCGGGGGGTGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCCAGTCTGGAAGTTGCAACTAAGCAACAAGCAAACTCACTTCGACCTGGCAATGTCGTGGCTGTTCAATTGCCTTCAACTTCTCCTTTGCTTATCAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCACAGAGGCCAAATTATCTCAACAATGACTATGATGAAGGTTGCAAACTTCTTCGTGCTGCTTACTCTTCTCTATTTCAAGGCTTTATTTCTATAGTCGAAGACCAATTTAAGTCAGTGAAGGGAATTCACGAACGCCTCAGCTCAGCACCTTCAGAATCACAAAAGCACTCTGAGGAAAGCCATCACAAGTTCAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAAGATTCAGCTGAAGCATTAAACCAAAACAACAATAAGACTGTCCACAAAATGAGCAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAAACATGGCGATGTTGTACTGGAGACATCAGATGATGTTGTCGTACTGAATGATGTTTATCCAAAAGCACGCAAGCATCTTCTTGTAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACGTAAAGAACACCTTCCATTGTTGAAGACGATGCACGCCGTGGGTTTGAAGTGGATCGATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTGTAAGCCAGGATTTCGACTCCAGTTATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACTGATTTCTTCCGAGACTCAGTCGACGTTATTGACGAAGTCAGTAGCCATGGAAAGGCGAGCATCAAGGACGATGAGAGCTCGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTAAAAACACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTACTTGAGGGCGGGCGTTTAGTGATTGCACCAAGTTATGCTCATGAATGA | 2271 | 43.33 | MDMDIDENSAAKGKEGQGKLIMVILVGAPGSGKSTFCELVMRSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKNVFVDRCNLEIEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDALPDGCFGQKNPDKKVQLGIMKFLKKAENPAKTCSSANTIKDSPISQSTQEKSYSCDKKEESACTMFSNVDKELEKGENPGVRSLEKNISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNITSTKFFTFVGDITKLNSEGGLCCNVIANAANWKILNKDISCRRLKPGGGGVNAAIFSAAGPSLEVATKQQANSLRPGNVVAVQLPSTSPLLIREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRAAYSSLFQGFISIVEDQFKSVKGIHERLSSAPSESQKHSEESHHKFKREDLQNPERSKKWKGSQDSAEALNQNNNKTVHKMSKHWGSWAQALYNTAMHPEKHGDVVLETSDDVVVLNDVYPKARKHLLVVARYEGLDQLADVRKEHLPLLKTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVVSQDFDSSYLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKASIKDDESSMSMELRCNRCRSAHPNLPKLKTHISKCQAPFPSTLLEGGRLVIAPSYAHE | 756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 872961 | 876643 | + | Maker00033589 | Lcy5g0083 | 631898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0083 | 756 | MobiDBLite | consensus disorder prediction | 493 | 536 | - | - | |
Lcy5g0083 | 756 | FunFam | Transcription factor bHLH140 | 8 | 178 | - | - | |
Lcy5g0083 | 756 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 678 | 732 | IPR032566 | - | |
Lcy5g0083 | 756 | SUPERFAMILY | Macro domain-like | 274 | 314 | IPR043472 | - | |
Lcy5g0083 | 756 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 231 | 318 | IPR043472 | - | |
Lcy5g0083 | 756 | ProSiteProfiles | Macro domain profile. | 333 | 596 | IPR002589 | - | |
Lcy5g0083 | 756 | SUPERFAMILY | Macro domain-like | 327 | 476 | IPR043472 | - | |
Lcy5g0083 | 756 | Pfam | AAA domain | 22 | 149 | - | - | |
Lcy5g0083 | 756 | Gene3D | - | 6 | 178 | IPR027417 | - | |
Lcy5g0083 | 756 | PANTHER | APRATAXIN-RELATED | 84 | 751 | - | GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER) | |
Lcy5g0083 | 756 | SUPERFAMILY | HIT-like | 543 | 716 | IPR036265 | - | |
Lcy5g0083 | 756 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 22 | 165 | IPR027417 | - | |
Lcy5g0083 | 756 | Pfam | Macro domain | 369 | 462 | IPR002589 | - | |
Lcy5g0083 | 756 | ProSiteProfiles | HIT domain profile. | 560 | 668 | IPR011146 | GO:0003824(InterPro) | |
Lcy5g0083 | 756 | FunFam | aprataxin isoform X2 | 554 | 734 | - | - | |
Lcy5g0083 | 756 | ProSitePatterns | HIT domain signature. | 642 | 660 | IPR019808 | - | |
Lcy5g0083 | 756 | Gene3D | - | 555 | 736 | IPR036265 | - | |
Lcy5g0083 | 756 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 321 | 489 | IPR043472 | - | |
Lcy5g0083 | 756 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 561 | 673 | - | - | |
Lcy5g0083 | 756 | FunFam | Transcription factor bHLH140 | 326 | 483 | - | - | |
Lcy5g0083 | 756 | MobiDBLite | consensus disorder prediction | 499 | 531 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0083 | K10863 | - | csv:101216867 | 1286.94 |