Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0083 ATGGATATGGATATCGACGAAAATTCGGCAGCCAAAGGAAAGGAAGGGCAAGGGAAGCTCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGCGTTCCTCTTCTCGCCCTTGGGTTCGAATCTGCCAGGACACGATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCTTTGAATGATGGAAAGAATGTATTTGTGGATAGGTGCAATCTTGAAATAGAGCAGCGTGCAGACTTTGTGAAACTTGGTGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCACAGCTCTGTATTTCTCGTTCGGTTAAGCGGACTGGTCATGAAGGGAATTTGTCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCCAAGCTAAATGAAGGGTTCACTCGCATAACCTTTTGCCACAATGAGACTGACGTTCAATCCGCTATAGACACGTACAAATCACTTGGTTTACATGATGCACTTCCAGATGGATGTTTTGGACAGAAGAACCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTGCTAAGACGTGTTCTAGTGCCAATACCATTAAGGATTCTCCAATTTCTCAAAGTACCCAGGAAAAGAGCTACTCTTGTGATAAAAAGGAAGAGTCTGCCTGCACAATGTTTAGCAATGTCGATAAAGAGTTAGAGAAAGGTGAAAATCCAGGTGTTAGATCCTTAGAAAAAAATATTTCTCAAAGTGATCCTCCAACTCTTGCATTTCCATCTATTTCGACATCAGATTTCAAGTTCAGCCATGAGAAGGCTGCTGAAATTATTGTTGAGAAGGTTGAGGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTGATGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGTTAAAGCTAAAGCAGCCAAGAAGAATATTACTTCGACCAAGTTTTTTACATTCGTAGGTGATATAACCAAACTCAATTCAGAAGGTGGATTGTGCTGCAATGTTATAGCCAATGCTGCAAACTGGAAGATACTGAATAAAGATATTTCGTGCAGGCGACTGAAACCGGGGGGTGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCCAGTCTGGAAGTTGCAACTAAGCAACAAGCAAACTCACTTCGACCTGGCAATGTCGTGGCTGTTCAATTGCCTTCAACTTCTCCTTTGCTTATCAGGGAAGGAGTAACCCATGTCATACATGTTCTTGGACCAAACATGAATCCACAGAGGCCAAATTATCTCAACAATGACTATGATGAAGGTTGCAAACTTCTTCGTGCTGCTTACTCTTCTCTATTTCAAGGCTTTATTTCTATAGTCGAAGACCAATTTAAGTCAGTGAAGGGAATTCACGAACGCCTCAGCTCAGCACCTTCAGAATCACAAAAGCACTCTGAGGAAAGCCATCACAAGTTCAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAAGATTCAGCTGAAGCATTAAACCAAAACAACAATAAGACTGTCCACAAAATGAGCAAGCACTGGGGCTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAAACATGGCGATGTTGTACTGGAGACATCAGATGATGTTGTCGTACTGAATGATGTTTATCCAAAAGCACGCAAGCATCTTCTTGTAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACGTAAAGAACACCTTCCATTGTTGAAGACGATGCACGCCGTGGGTTTGAAGTGGATCGATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCACCTACATGTTGTAAGCCAGGATTTCGACTCCAGTTATCTGAAGAACAAGAAGCATTGGAATTCTTTCAACACTGATTTCTTCCGAGACTCAGTCGACGTTATTGACGAAGTCAGTAGCCATGGAAAGGCGAGCATCAAGGACGATGAGAGCTCGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTAAAAACACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTACTTGAGGGCGGGCGTTTAGTGATTGCACCAAGTTATGCTCATGAATGA 2271 43.33 MDMDIDENSAAKGKEGQGKLIMVILVGAPGSGKSTFCELVMRSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKNVFVDRCNLEIEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDTYKSLGLHDALPDGCFGQKNPDKKVQLGIMKFLKKAENPAKTCSSANTIKDSPISQSTQEKSYSCDKKEESACTMFSNVDKELEKGENPGVRSLEKNISQSDPPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVMVDLSHGSKILSLVKAKAAKKNITSTKFFTFVGDITKLNSEGGLCCNVIANAANWKILNKDISCRRLKPGGGGVNAAIFSAAGPSLEVATKQQANSLRPGNVVAVQLPSTSPLLIREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRAAYSSLFQGFISIVEDQFKSVKGIHERLSSAPSESQKHSEESHHKFKREDLQNPERSKKWKGSQDSAEALNQNNNKTVHKMSKHWGSWAQALYNTAMHPEKHGDVVLETSDDVVVLNDVYPKARKHLLVVARYEGLDQLADVRKEHLPLLKTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVVSQDFDSSYLKNKKHWNSFNTDFFRDSVDVIDEVSSHGKASIKDDESSMSMELRCNRCRSAHPNLPKLKTHISKCQAPFPSTLLEGGRLVIAPSYAHE 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 872961 876643 + Maker00033589 Lcy5g0083 631898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0083 756 MobiDBLite consensus disorder prediction 493 536 - -
Lcy5g0083 756 FunFam Transcription factor bHLH140 8 178 - -
Lcy5g0083 756 Pfam C2HE / C2H2 / C2HC zinc-binding finger 678 732 IPR032566 -
Lcy5g0083 756 SUPERFAMILY Macro domain-like 274 314 IPR043472 -
Lcy5g0083 756 Gene3D Leucine Aminopeptidase, subunit E, domain 1 231 318 IPR043472 -
Lcy5g0083 756 ProSiteProfiles Macro domain profile. 333 596 IPR002589 -
Lcy5g0083 756 SUPERFAMILY Macro domain-like 327 476 IPR043472 -
Lcy5g0083 756 Pfam AAA domain 22 149 - -
Lcy5g0083 756 Gene3D - 6 178 IPR027417 -
Lcy5g0083 756 PANTHER APRATAXIN-RELATED 84 751 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Lcy5g0083 756 SUPERFAMILY HIT-like 543 716 IPR036265 -
Lcy5g0083 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 165 IPR027417 -
Lcy5g0083 756 Pfam Macro domain 369 462 IPR002589 -
Lcy5g0083 756 ProSiteProfiles HIT domain profile. 560 668 IPR011146 GO:0003824(InterPro)
Lcy5g0083 756 FunFam aprataxin isoform X2 554 734 - -
Lcy5g0083 756 ProSitePatterns HIT domain signature. 642 660 IPR019808 -
Lcy5g0083 756 Gene3D - 555 736 IPR036265 -
Lcy5g0083 756 Gene3D Leucine Aminopeptidase, subunit E, domain 1 321 489 IPR043472 -
Lcy5g0083 756 Pfam Scavenger mRNA decapping enzyme C-term binding 561 673 - -
Lcy5g0083 756 FunFam Transcription factor bHLH140 326 483 - -
Lcy5g0083 756 MobiDBLite consensus disorder prediction 499 531 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0083 K10863 - csv:101216867 1286.94