Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0100 ATGGAAGGGCACCATCCTCATCCCCTCATTCATCTCCAGCAACAGCTTCAACATCCGCCGCCGCCGCATCTCCACCAGAGCCTCGCCGTGACCGCCGATCAATCCGCCGCTGCAGCTGACAGATTCCCTCAATGGAGTATTCAGGAAACGAAGGAGTTTTTGATGATCAGAGCCGAGCTCGATCAGACTTTCATGGAGACCAAAAGGAACAAAGTCTTGTGGGAAATCACCGCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGACACAATGGAGCCAGAGATTTCAAGGCAGCAATTTCCATTCTACACAGAACTAGAAGCGATTTTCGGAGCGAGAATGCAGCGATTATGGGCGGAGGCGGAGAGCGGGGGGAGTGGATCGAAGAAGAAGATGATGGCATTATCGTCGGACGAAGATGAAGAGAACGAGGACAGCGACGGGGACGGGGGTGACGGGAAGGTCGGCAATAATAGGAAGAGGAAGAAGGGTAAGGCCAACGTCGGGGCCAGCTCGGGCGGGGGAAGTAGTAGTGTCAATCACTTGAAAGAAATATTGGAAGATTTCATGAACCAACAAATGCAAATGGAGGTTCAATGGAGGGAAGCATTTGAAGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGGTGGAGAGAAAGAGAAGAGCAAAGGAGAATGAGAGAAGAACTTAGGGCTGAGAAAAGAGATGCTTTAATCACAGCTTTGTTAAACAAGCTAAGAAGAGATGATCATCATATGTAG 876 48.06 MEGHHPHPLIHLQQQLQHPPPPHLHQSLAVTADQSAAAADRFPQWSIQETKEFLMIRAELDQTFMETKRNKVLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCDTMEPEISRQQFPFYTELEAIFGARMQRLWAEAESGGSGSKKKMMALSSDEDEENEDSDGDGGDGKVGNNRKRKKGKANVGASSGGGSSSVNHLKEILEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREELRAEKRDALITALLNKLRRDDHHM 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1021747 1022849 - Maker00033400 Lcy5g0100 631915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0100 291 Coils Coil 234 278 - -
Lcy5g0100 291 MobiDBLite consensus disorder prediction 140 198 - -
Lcy5g0100 291 Pfam Myb/SANT-like DNA-binding domain 44 128 IPR044822 -
Lcy5g0100 291 ProSiteProfiles Myb-like domain profile. 45 101 IPR001005 -
Lcy5g0100 291 FunFam Zinc finger and SCAN domain-containing 20 45 106 - -
Lcy5g0100 291 PANTHER FI21293P1 26 286 - -
Lcy5g0100 291 CDD GT1 43 107 - -
Lcy5g0100 291 Gene3D - 45 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0768 Lcy-Chr6:7549733 Lcy5g0100 Lcy-Chr5:1021747 2.72E-14 transposed
Lcy1g1564 Lcy-Chr1:15559317 Lcy5g0100 Lcy-Chr5:1021747 3.72E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20039 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0100 - - - 0.0