Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0103 | ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTATGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCCGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGGTCACAGGGGAGCGCTAAGGTGAAAAGCAACCCTAAACTTGCCGAACAGAGTTGTGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATACAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG | 705 | 46.81 | MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1075456 | 1077555 | - | Maker00033515 | Lcy5g0103 | 631918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0103 | 234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 228 | IPR013083 | - | |
Lcy5g0103 | 234 | PANTHER | CPG BINDING PROTEIN | 7 | 233 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Lcy5g0103 | 234 | FunFam | PHD finger alfin-like protein | 173 | 229 | - | - | |
Lcy5g0103 | 234 | MobiDBLite | consensus disorder prediction | 141 | 169 | - | - | |
Lcy5g0103 | 234 | ProSiteProfiles | Zinc finger PHD-type profile. | 178 | 230 | IPR019787 | - | |
Lcy5g0103 | 234 | MobiDBLite | consensus disorder prediction | 146 | 162 | - | - | |
Lcy5g0103 | 234 | SMART | PHD_3 | 180 | 228 | IPR001965 | - | |
Lcy5g0103 | 234 | SUPERFAMILY | FYVE/PHD zinc finger | 170 | 232 | IPR011011 | - | |
Lcy5g0103 | 234 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Lcy5g0103 | 234 | Pfam | PHD-finger | 181 | 227 | IPR019787 | - | |
Lcy5g0103 | 234 | ProSitePatterns | Zinc finger PHD-type signature. | 181 | 227 | IPR019786 | - | |
Lcy5g0103 | 234 | CDD | PHD_AL_plant | 180 | 230 | IPR044104 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g2232 | Lcy-Chr3:49163114 | Lcy5g0103 | Lcy-Chr5:1075456 | 3.00E-106 | dispersed | |
Lcy5g0103 | Lcy-Chr5:1075456 | Lcy6g1123 | Lcy-Chr6:12809765 | 1.97E-94 | dispersed | |
Lcy7g0990 | Lcy-Chr7:10309223 | Lcy5g0103 | Lcy-Chr5:1075456 | 2.45E-53 | transposed | |
Lcy5g0103 | Lcy-Chr5:1075456 | Lcy7g0988 | Lcy-Chr7:10289649 | 1.44E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20040 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0103 | K26274 | - | csv:101211970 | 452.21 |