Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0103 ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGATTACGCCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTATGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCCGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGGTCACAGGGGAGCGCTAAGGTGAAAAGCAACCCTAAACTTGCCGAACAGAGTTGTGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATACAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 705 46.81 MEMPSTTPKTVEEIFKDYAGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1075456 1077555 - Maker00033515 Lcy5g0103 631918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0103 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 228 IPR013083 -
Lcy5g0103 234 PANTHER CPG BINDING PROTEIN 7 233 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy5g0103 234 FunFam PHD finger alfin-like protein 173 229 - -
Lcy5g0103 234 MobiDBLite consensus disorder prediction 141 169 - -
Lcy5g0103 234 ProSiteProfiles Zinc finger PHD-type profile. 178 230 IPR019787 -
Lcy5g0103 234 MobiDBLite consensus disorder prediction 146 162 - -
Lcy5g0103 234 SMART PHD_3 180 228 IPR001965 -
Lcy5g0103 234 SUPERFAMILY FYVE/PHD zinc finger 170 232 IPR011011 -
Lcy5g0103 234 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy5g0103 234 Pfam PHD-finger 181 227 IPR019787 -
Lcy5g0103 234 ProSitePatterns Zinc finger PHD-type signature. 181 227 IPR019786 -
Lcy5g0103 234 CDD PHD_AL_plant 180 230 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2232 Lcy-Chr3:49163114 Lcy5g0103 Lcy-Chr5:1075456 3.00E-106 dispersed
Lcy5g0103 Lcy-Chr5:1075456 Lcy6g1123 Lcy-Chr6:12809765 1.97E-94 dispersed
Lcy7g0990 Lcy-Chr7:10309223 Lcy5g0103 Lcy-Chr5:1075456 2.45E-53 transposed
Lcy5g0103 Lcy-Chr5:1075456 Lcy7g0988 Lcy-Chr7:10289649 1.44E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20040 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0103 K26274 - csv:101211970 452.21