Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0112 ATGGATTTCGAACAAGGAACGTCGATCTTGCAAAACGGCGCCGTCAAGGGTTCGCTGAGGCACGGTCGGACGGTTCACAACATGTCGTCGTCATCGCTGCGCAAAAGGTCCGATTTGACCCTCGTTTCCAAGGTTCGTTTCGGAGGCCTCAGGCTGTTGCTTGTGAATCTCCAGGAGGTCATTTTGGGAACTAGGATTTGGATTCTTTTTCCGGCGATTCCGTTGGCCGTTTTGGCCAACTCTCTTGGTTTCGGAAGACCATGGGTTTTCGTTCTTAGCTTAATGGGCCTTGCTCCACTTGCAGAACGCCTGAGTTTTCTGACCGAACAAATCTCATACTTCACGGGCCCTACAGTTGGTGGATTACTAAATGCGACATGTGGCAATGCGACGGAGCTAATCATAGCAATATTTGCACTTAGCAAGCATAAGATTGAGTTAGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCCCTCTTCATTGGTGGCATCGTCAATCTTAATAAAGAACAAATTTATGATCGAAGACAAGCTGAGGTGAACGCGCACATGCTGTTGTTGGCGCTTTTATGCCATTCCCTTCCGATGTTATTTCCTTACGCCGGAGGATCGGCTGACGTGGCCGGAGCCGGAACGCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCAGCTCTGGACTCATCGCCGATTATTTGAACCAGAAAAGGAACCGGACGAATACGACGACGTTGTGGAAGAAGCTCCGGTGATTGGAATATGGAGCGCAATGGCGTGGTTGGTGGGTTCCACCGTTCTCATTGCTCTGTTGTCTGAGTACGTGGTCGCCACAATTCAGGATGCATCAGAAACTTGGGGTTTATCGGTTGCGTTCCTTAGCATAATCTTGCTACCACTAGTTGGTAATGCAGCTGAGCATGCAGGAGCTGTCATATTTGCTTACAAGAACAAATTGGACATAACTTTAGGTGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTGTGTGTAATTGTTGCTTGGGCTATGGGGATGAATATGGATCTTGATTTTAATATCCTTGAAACTGTCTCCCTTACTCTTTCGATAATTGCTTCATCATCCATTTTACAGGACGGCACTTCTCACTACATGAAGGGATTGATTCTCCTTCTCTTCTATATTTTCATTTCAACATGTTTCTTCTTAACCAATGATGAGGTTACTATCATCAATTCCGGGTTGTTGGGAGTTCAACAAGAGTAA 1314 45.66 MDFEQGTSILQNGAVKGSLRHGRTVHNMSSSSLRKRSDLTLVSKVRFGGLRLLLVNLQEVILGTRIWILFPAIPLAVLANSLGFGRPWVFVLSLMGLAPLAERLSFLTEQISYFTGPTVGGLLNATCGNATELIIAIFALSKHKIELVKYSLLGSVLSNLLLVLGTSLFIGGIVNLNKEQIYDRRQAEVNAHMLLLALLCHSLPMLFPYAGGSADVAGAGTLRLSRAGSIVMLVAYVAYLIFQLWTHRRLFEPEKEPDEYDDVVEEAPVIGIWSAMAWLVGSTVLIALLSEYVVATIQDASETWGLSVAFLSIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWAMGMNMDLDFNILETVSLTLSIIASSSILQDGTSHYMKGLILLLFYIFISTCFFLTNDEVTIINSGLLGVQQE 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1155959 1162942 + Maker00033099 Lcy5g0112 631927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0112 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 423 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Lcy5g0112 437 NCBIfam calcium/proton exchanger 71 418 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Lcy5g0112 437 Gene3D - 117 259 IPR044880 -
Lcy5g0112 437 Gene3D - 262 418 IPR044880 -
Lcy5g0112 437 FunFam Vacuolar cation/proton exchanger 263 419 - -
Lcy5g0112 437 Pfam Sodium/calcium exchanger protein 275 416 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0112 437 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0088 Lcy-Chr13:892775 Lcy5g0112 Lcy-Chr5:1155959 1.24E-94 transposed
Lcy8g1337 Lcy-Chr8:40122536 Lcy5g0112 Lcy-Chr5:1155959 2.26E-109 transposed
Lcy1g1557 Lcy-Chr1:15454261 Lcy5g0112 Lcy-Chr5:1155959 6.41E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0112 K07300 - csv:101213176 655.981