Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0115 ATGGCAACCACCACAAACGCCGCCGCCGCCGCATCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGGGCACAGGCCCGATTCTCATTCGGAAAAGGGAAACAAAAAAGCCCACCGAAGAAATCGTCAAAGCCCAGCTCGGACCGGCCGCTCTGGTACCCGGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGCAAGCCAGCGGAGTACTTGCAGTTCGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTCGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGACAGCCACTTCCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAAAGAAACGCCGAGCTCGACCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACGTTCTTCTTTTCATCCTCTTGA 876 57.31 MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1175515 1182935 + Maker00033198 Lcy5g0115 631930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0115 291 SUPERFAMILY Chlorophyll a-b binding protein 47 286 - -
Lcy5g0115 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 10 283 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy5g0115 291 FunFam Chlorophyll a-b binding protein, chloroplastic 109 288 - -
Lcy5g0115 291 Pfam Chlorophyll A-B binding protein 63 259 IPR022796 -
Lcy5g0115 291 Gene3D Chlorophyll a/b binding protein domain 57 289 - -
Lcy5g0115 291 MobiDBLite consensus disorder prediction 18 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1546 Lcy-Chr1:15313044 Lcy5g0115 Lcy-Chr5:1175515 1.98E-180 dispersed
Lcy5g0115 Lcy-Chr5:1175515 Lcy5g1744 Lcy-Chr5:40062234 7.92E-29 dispersed
Lcy5g0115 Lcy-Chr5:1175515 Lcy6g1248 Lcy-Chr6:15037695 3.81E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0115 K08915 - rcu:8267514 502.671