Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0118 ATGAAAGGGCTTTACATTGCAATGGCTTCTTCTTGCTTTGCATTCGTGAATTGCTGTAAAGGAAATTGCAGCTCCGAGGAGGAACCAGCAGAAGGTGAGAATCAGGGAGTTTTGAGGGATGGTACCAATGTTGCAGTGAAAGCACTTTCTGCAGAATCAGCTCAGGGAACTCGTGAATTTCTAACTGAGATAACTATGATATCAAATATCAGACATCAAAATCTTGTTGAGCTGATTGGTTGTTGCGTTGAAGGCACTCATAGAATTTTGGTGTATGAATACCTTGAGAACAACAGCCTCGCGAGTACTTTGCTCGGTACAATGAGTAAGCATGTCGTTCTGGATTGGCCACAGAGAGCTAAAATTTGTCTTGGTACAGCTCTTGGTCTTGCATTTCTACATGAGGAAGCTGAACTGTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTCATCCTAAAATTGGAGACTTTGGGTTGGCTAAACTTTTCCCGGACAACGTTACTCATGTTAGCACTCGAGTCGCCGGAACAGTTGGATATTTGGCTCCAGAGTATGCACTTTTAGGACAGTTGACAAAGAAGGCAGATGTATACAGTTTTGGCGTGCTCATGCTGGAAGTAATTAGTGGAAGTAGCAGCAGTAAAGCAGCATTCGGAGAAGAGTTGTCGATTCTCGTGGAATGGACTTGGAAATTAAAACAAGAAGGACGACTCGTAGAACTTGTCGATCCGGAACTGATCGAATATCCCAAAGCCGAAGTGATGCGTTTCATCACAGTTGGGCTCTTCTGTACCCAAGCAGCTGCAAATCAAAGGCCAAGCATGAAGCAGGTTGTGGAAATGCTTTCAAGAGAAGTACACCTAAATGAAAAGCTATTGACAGAGCCAGGAGTTTACAAAGGACACAAAACTAGGAAGTTGAATGGTGCTTCTGCTAGTTCAGAGGGATCATCATCCTCTCATAGAGATAAAGGTAAGAAAGCTATGAAGTCTTCTACTTCTTCACAACAATTTAATAGCTCAAACAGTCTGACTCAAATGCTTCCTAGGTGA 1074 42.46 MKGLYIAMASSCFAFVNCCKGNCSSEEEPAEGENQGVLRDGTNVAVKALSAESAQGTREFLTEITMISNIRHQNLVELIGCCVEGTHRILVYEYLENNSLASTLLGTMSKHVVLDWPQRAKICLGTALGLAFLHEEAELSVVHRDIKASNILLDRNFHPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEVISGSSSSKAAFGEELSILVEWTWKLKQEGRLVELVDPELIEYPKAEVMRFITVGLFCTQAAANQRPSMKQVVEMLSREVHLNEKLLTEPGVYKGHKTRKLNGASASSEGSSSSHRDKGKKAMKSSTSSQQFNSSNSLTQMLPR 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1200869 1203924 + Maker00033288 Lcy5g0118 631933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0118 357 SUPERFAMILY Protein kinase-like (PK-like) 36 289 IPR011009 -
Lcy5g0118 357 Pfam Protein tyrosine and serine/threonine kinase 40 289 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0118 357 SMART serkin_6 14 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0118 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0118 357 MobiDBLite consensus disorder prediction 306 357 - -
Lcy5g0118 357 ProSiteProfiles Protein kinase domain profile. 1 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0118 357 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 334 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lcy5g0118 357 FunFam Putative LRR receptor-like serine/threonine-protein kinase 95 301 - -
Lcy5g0118 357 MobiDBLite consensus disorder prediction 337 357 - -
Lcy5g0118 357 PIRSF TyrPK_CSF1-R 107 356 - -
Lcy5g0118 357 PIRSF TyrPK_CSF1-R 31 104 - -
Lcy5g0118 357 Gene3D Transferase(Phosphotransferase) domain 1 96 302 - -
Lcy5g0118 357 Gene3D Phosphorylase Kinase; domain 1 34 95 - -
Lcy5g0118 357 CDD STKc_IRAK 36 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0118 Lcy-Chr5:1200869 Lcy6g0701 Lcy-Chr6:6834561 7.88E-103 dispersed
Lcy5g1900 Lcy-Chr5:41812680 Lcy5g0118 Lcy-Chr5:1200869 7.93E-48 dispersed
Lcy5g0118 Lcy-Chr5:1200869 Lcy9g1375 Lcy-Chr9:38622455 8.77E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65904 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0118 - - - 0.0