Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0125 ATGGAGGGCAGAGAAGAAGACGTTAGAGTCGGAGCCAACAGGTTCGAAGAGAGGCAGCCGATCGGGACGGCGGCGCAGACCCAAAATGCGGCGAAGGACTACCGTGAGCCGCCACCGGCGCCGCTGTTTGAGGCGGGGGAGTTGTCGTCTTGGTCGTTTTACAGGGCTGGGATTGCTGAGTTTGTGGCGAGTTTCTTGTTCCTTTATGTGACTGTTTTGACAGTAATGGGAGTGAACAGATCTCCGAATAAGTGCTCCACCGTTGGTATTCAAGGCATTGCTTGGGCCTTTGGCGGCATGATCTTTGCTCTGGTTTATTGCACTGCTGGTATTTCAGGTGGTCACATAAACCCAGCCGTCACATTCGGTCTATTACTGGCAAGGAAGCTGTCACTGACAAGAGCAATCTTTTACATAATAATGCAGTGCTTAGGCGCCATCTGCGGCGCCGCCGTCGTGAAAGGCTTCGAAAAGGGACAATTCGAAAGGGCCGGCGGCGGCGCCAACACCGTGAGTGCCGGCTATTCTAAAACAGACGGCCTCGGAGCTGAAATCATGGGCACTTTTCTGCTTGTTTACACTGTCTTTTCAGCCACCGATGCAAAGCGAAATGCCCGAGATTCGCACGTTCCTATGTTGGCTCCTTTGCCGATTGGGTTTGCGGTGTTTTTGGTTCATTTGGCCACCATTCCGATCACCGGAACCGGCATTAATCCGGCCAGAAGCCTCGGCGCCGCCCTCGTTTACAACCGCCACAAAGTGTGGCACGACCATTGGGTGTTCTGGGCAGGGCCGTTGATCGGGGCAGCACTTGCGGCTCTGTACCATCAGACGGTGATCAGGGCGATTCCATTCAAGTCCAAATGA 867 54.21 MEGREEDVRVGANRFEERQPIGTAAQTQNAAKDYREPPPAPLFEAGELSSWSFYRAGIAEFVASFLFLYVTVLTVMGVNRSPNKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAIFYIIMQCLGAICGAAVVKGFEKGQFERAGGGANTVSAGYSKTDGLGAEIMGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNRHKVWHDHWVFWAGPLIGAALAALYHQTVIRAIPFKSK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1344583 1347714 + Maker00033594 Lcy5g0125 631940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0125 288 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Lcy5g0125 288 FunFam Probable aquaporin PIP1-2 40 288 - -
Lcy5g0125 288 Pfam Major intrinsic protein 47 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 NCBIfam MIP family channel protein 59 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 CDD MIP 55 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 SUPERFAMILY Aquaporin-like 48 281 IPR023271 -
Lcy5g0125 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 287 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lcy5g0125 288 Gene3D Glycerol uptake facilitator protein. 40 287 IPR023271 -
Lcy5g0125 288 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0125 288 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0125 Lcy-Chr5:1344583 Lcy7g0972 Lcy-Chr7:9978708 6.00E-149 dispersed
Lcy12g1639 Lcy-Chr12:36747682 Lcy5g0125 Lcy-Chr5:1344583 8.67E-172 transposed
Lcy5g0125 Lcy-Chr5:1344583 Lcy7g0971 Lcy-Chr7:9971044 1.33E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0125 K09872 - cit:102618921 502.671