Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0142 ATGCTTCAGATCCGGCTTAGCAAGGTTCCACAGGCCGAAGGTGGTGCTGGAGCGGTGAAGCCCTTGCCGACGGAGACTGTGACGGTCGCGTGCCCTGACCACCTTGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCGGCTACCGCTGCTTCCACTGTCAAGTCTGTGGGTCGCAGGTCTCGCCGTCAGCTTGGAGAACGAGTTCATTTTTGTGTCAGATGCGATTTTCCCATTGCAATTTATGGGCGCCTGAGCCCTTGCGAGCATGCCTTCTGTCTTGATTGTGCAAGGAGCGATTCTATATGCTACCTCTGTGATGACCGGATTCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCAGCCCCACACTGTCTCAAGTCTTTTCTTAAGAGGACTGAATTTGAATCTCATATACACGAGAGCCACGCTGACCTTCTTAAGCCAAATGCAGATAAGGAAGATGGAAATGAAATTGAGGCTCATAGTGCCAAACAATCTACAGTTTCTGAATCCACAGTCCGAGGTCCATCAAGACCACTCATATCTCCAGGTTCCAATTCCCAACCTCAAGAACGTGAAGAAAAATTTCATCGCCAACAATCTAGAGACCAACCCAGGTCTGGCATGCAGCAAAAGCCAACGCCAATTTTTGGTCAGAACCAAAATAATACAGCTGAGTCTCAACAAGACAGCGGCCATTCACAAGGCTTTGATCGACATGGCCCTCATGGCCGTTTTCCCCCACAAAACTTTGACGTACAGGGTACTCCACATCAGGAGTCCAGTCAGTTTTCTGAGAAACAGCAAGGAATTCTAAGCGACACTCCATATTCTCAGTACCCTCCTTTGCAATCAATTCCACCACCGAATTATGTGGTTCCAGCTAACTCAAATCCAATGTTGACTCCCCCTCTACCATTTGTTTACCCTCCTTTTCCAGTCGAGGGAGCACAACAATATTACAGTACACCCTATGAAGTGTCACGGCAAGACTCTGCAGCCGAGAATGGATCCGAGCAAGGGTCATTGCTAGGCTTTCCACCAGGTGCAGCAGGAGGAATGAATTTCTCAGCAACTTATCCGCAGTCTTGGAATACTGGACAAGCCGGCGGTCCTTATGAGCATGCTGCTGGAGGTCAAGGAATGCCTGATGCTTTTGCTAACACACCTGATTCTCAAGGAAAACATGGATTTTACCAAGGAGACTACAGACGCAGCCCTGGAGGCTTGCCTGTGAATTCTTCTGTTTCGTCCATGGCCAACAAGGGCATGGATATGGGGCATGCAGGCAATGCGATGGACTTAAGGGATGGTAAAGGTATATTGGCACCACAGCCTCTAGTACAATTGCCTCCGCCTCCACCACCCCCACCATACTTGTCGCATAATAAGCGGGGTAAGTTTTATTCAGGAGATATGGATCATGATGGGCAAGGCCTTGGATGGCAGAATGACAGCCATAGCCGAGATAGCTTTGGAAGTGGCCAAGACTGA 1515 48.84 MLQIRLSKVPQAEGGAGAVKPLPTETVTVACPDHLVLADLPVAKGIGAATAASTVKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRTEFESHIHESHADLLKPNADKEDGNEIEAHSAKQSTVSESTVRGPSRPLISPGSNSQPQEREEKFHRQQSRDQPRSGMQQKPTPIFGQNQNNTAESQQDSGHSQGFDRHGPHGRFPPQNFDVQGTPHQESSQFSEKQQGILSDTPYSQYPPLQSIPPPNYVVPANSNPMLTPPLPFVYPPFPVEGAQQYYSTPYEVSRQDSAAENGSEQGSLLGFPPGAAGGMNFSATYPQSWNTGQAGGPYEHAAGGQGMPDAFANTPDSQGKHGFYQGDYRRSPGGLPVNSSVSSMANKGMDMGHAGNAMDLRDGKGILAPQPLVQLPPPPPPPPYLSHNKRGKFYSGDMDHDGQGLGWQNDSHSRDSFGSGQD 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1485795 1489012 - Maker00033153 Lcy5g0142 631957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0142 504 FunFam E3 ubiquitin-protein ligase Hakai 70 124 - -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 210 242 - -
Lcy5g0142 504 CDD RING-HC_HAKAI-like 71 120 IPR040380 -
Lcy5g0142 504 ProSitePatterns Zinc finger C2H2 type domain signature. 126 149 IPR013087 -
Lcy5g0142 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 150 IPR013087 -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 259 287 - -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 168 196 - -
Lcy5g0142 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 480 IPR040383 GO:0016567(PANTHER)|GO:0016567(InterPro)|GO:0030155(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Lcy5g0142 504 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 369 504 - -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 453 468 - -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 152 167 - -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 152 290 - -
Lcy5g0142 504 MobiDBLite consensus disorder prediction 488 504 - -
Lcy5g0142 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 124 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0142 K15685 - csv:101220422 860.522