Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0142 | ATGCTTCAGATCCGGCTTAGCAAGGTTCCACAGGCCGAAGGTGGTGCTGGAGCGGTGAAGCCCTTGCCGACGGAGACTGTGACGGTCGCGTGCCCTGACCACCTTGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCGGCTACCGCTGCTTCCACTGTCAAGTCTGTGGGTCGCAGGTCTCGCCGTCAGCTTGGAGAACGAGTTCATTTTTGTGTCAGATGCGATTTTCCCATTGCAATTTATGGGCGCCTGAGCCCTTGCGAGCATGCCTTCTGTCTTGATTGTGCAAGGAGCGATTCTATATGCTACCTCTGTGATGACCGGATTCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCAGCCCCACACTGTCTCAAGTCTTTTCTTAAGAGGACTGAATTTGAATCTCATATACACGAGAGCCACGCTGACCTTCTTAAGCCAAATGCAGATAAGGAAGATGGAAATGAAATTGAGGCTCATAGTGCCAAACAATCTACAGTTTCTGAATCCACAGTCCGAGGTCCATCAAGACCACTCATATCTCCAGGTTCCAATTCCCAACCTCAAGAACGTGAAGAAAAATTTCATCGCCAACAATCTAGAGACCAACCCAGGTCTGGCATGCAGCAAAAGCCAACGCCAATTTTTGGTCAGAACCAAAATAATACAGCTGAGTCTCAACAAGACAGCGGCCATTCACAAGGCTTTGATCGACATGGCCCTCATGGCCGTTTTCCCCCACAAAACTTTGACGTACAGGGTACTCCACATCAGGAGTCCAGTCAGTTTTCTGAGAAACAGCAAGGAATTCTAAGCGACACTCCATATTCTCAGTACCCTCCTTTGCAATCAATTCCACCACCGAATTATGTGGTTCCAGCTAACTCAAATCCAATGTTGACTCCCCCTCTACCATTTGTTTACCCTCCTTTTCCAGTCGAGGGAGCACAACAATATTACAGTACACCCTATGAAGTGTCACGGCAAGACTCTGCAGCCGAGAATGGATCCGAGCAAGGGTCATTGCTAGGCTTTCCACCAGGTGCAGCAGGAGGAATGAATTTCTCAGCAACTTATCCGCAGTCTTGGAATACTGGACAAGCCGGCGGTCCTTATGAGCATGCTGCTGGAGGTCAAGGAATGCCTGATGCTTTTGCTAACACACCTGATTCTCAAGGAAAACATGGATTTTACCAAGGAGACTACAGACGCAGCCCTGGAGGCTTGCCTGTGAATTCTTCTGTTTCGTCCATGGCCAACAAGGGCATGGATATGGGGCATGCAGGCAATGCGATGGACTTAAGGGATGGTAAAGGTATATTGGCACCACAGCCTCTAGTACAATTGCCTCCGCCTCCACCACCCCCACCATACTTGTCGCATAATAAGCGGGGTAAGTTTTATTCAGGAGATATGGATCATGATGGGCAAGGCCTTGGATGGCAGAATGACAGCCATAGCCGAGATAGCTTTGGAAGTGGCCAAGACTGA | 1515 | 48.84 | MLQIRLSKVPQAEGGAGAVKPLPTETVTVACPDHLVLADLPVAKGIGAATAASTVKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRTEFESHIHESHADLLKPNADKEDGNEIEAHSAKQSTVSESTVRGPSRPLISPGSNSQPQEREEKFHRQQSRDQPRSGMQQKPTPIFGQNQNNTAESQQDSGHSQGFDRHGPHGRFPPQNFDVQGTPHQESSQFSEKQQGILSDTPYSQYPPLQSIPPPNYVVPANSNPMLTPPLPFVYPPFPVEGAQQYYSTPYEVSRQDSAAENGSEQGSLLGFPPGAAGGMNFSATYPQSWNTGQAGGPYEHAAGGQGMPDAFANTPDSQGKHGFYQGDYRRSPGGLPVNSSVSSMANKGMDMGHAGNAMDLRDGKGILAPQPLVQLPPPPPPPPYLSHNKRGKFYSGDMDHDGQGLGWQNDSHSRDSFGSGQD | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1485795 | 1489012 | - | Maker00033153 | Lcy5g0142 | 631957 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0142 | 504 | FunFam | E3 ubiquitin-protein ligase Hakai | 70 | 124 | - | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 210 | 242 | - | - | |
Lcy5g0142 | 504 | CDD | RING-HC_HAKAI-like | 71 | 120 | IPR040380 | - | |
Lcy5g0142 | 504 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 126 | 149 | IPR013087 | - | |
Lcy5g0142 | 504 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 124 | 150 | IPR013087 | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 259 | 287 | - | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 168 | 196 | - | - | |
Lcy5g0142 | 504 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED | 1 | 480 | IPR040383 | GO:0016567(PANTHER)|GO:0016567(InterPro)|GO:0030155(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro) | |
Lcy5g0142 | 504 | ProSitePatterns | Zinc finger RING-type signature. | 89 | 98 | IPR017907 | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 369 | 504 | - | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 453 | 468 | - | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 152 | 167 | - | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 152 | 290 | - | - | |
Lcy5g0142 | 504 | MobiDBLite | consensus disorder prediction | 488 | 504 | - | - | |
Lcy5g0142 | 504 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 124 | IPR013083 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0142 | K15685 | - | csv:101220422 | 860.522 |