Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0151 ATGGCGCCTCCGGAAGTCTCCCAGTCCGACATTGATTTGGAGCAGGGGAATCATCGGCGGTCTGTTAGCGGTAGTGAGTTGAGCGCCGACTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCTCAGTTTTATTCCACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCATCGGCTTCGGATCGTTCGGTAGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTTAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGTCAATCCGTTGCACGAAACATTCTCGGACCACATGAGGTTGAGTCAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCGACAACTGCAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGCCATCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCCTTTGTTATATCGTGGCTCTTCCACTTCAACGTGCCCTCGTAA 696 46.55 MAPPEVSQSDIDLEQGNHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPEVGVVSDSRRVSSASDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICQSVARNILGPHEVESTEQSNESNNASSTTAVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1548651 1551376 + Maker00033437 Lcy5g0151 631966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0151 231 MobiDBLite consensus disorder prediction 1 21 - -
Lcy5g0151 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 166 IPR013083 -
Lcy5g0151 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
Lcy5g0151 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Lcy5g0151 231 PANTHER ZINC FINGER, RING-CH-TYPE 35 230 - -
Lcy5g0151 231 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
Lcy5g0151 231 SUPERFAMILY RING/U-box 104 162 - -
Lcy5g0151 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2340 Lcy-Chr1:36522417 Lcy5g0151 Lcy-Chr5:1548651 1.73E-08 dispersed
Lcy5g0151 Lcy-Chr5:1548651 Lcy9g1461 Lcy-Chr9:39639486 2.47E-13 dispersed
Lcy1g1521 Lcy-Chr1:15002604 Lcy5g0151 Lcy-Chr5:1548651 1.00E-70 wgd
Lcy10g2219 Lcy-Chr10:46072880 Lcy5g0151 Lcy-Chr5:1548651 8.62E-75 wgd
Lcy11g0131 Lcy-Chr11:1417052 Lcy5g0151 Lcy-Chr5:1548651 6.29E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0151 - - - 0.0