Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0151 | ATGGCGCCTCCGGAAGTCTCCCAGTCCGACATTGATTTGGAGCAGGGGAATCATCGGCGGTCTGTTAGCGGTAGTGAGTTGAGCGCCGACTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCTCAGTTTTATTCCACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCATCGGCTTCGGATCGTTCGGTAGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTTAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGTCAATCCGTTGCACGAAACATTCTCGGACCACATGAGGTTGAGTCAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCGACAACTGCAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGCCATCGGTTTCTGAATTTTCTGCTTGCTTGTATGGTATTTGCCTTTGTTATATCGTGGCTCTTCCACTTCAACGTGCCCTCGTAA | 696 | 46.55 | MAPPEVSQSDIDLEQGNHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPEVGVVSDSRRVSSASDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICQSVARNILGPHEVESTEQSNESNNASSTTAVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1548651 | 1551376 | + | Maker00033437 | Lcy5g0151 | 631966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0151 | 231 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lcy5g0151 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 166 | IPR013083 | - | |
Lcy5g0151 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) | |
Lcy5g0151 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
Lcy5g0151 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 35 | 230 | - | - | |
Lcy5g0151 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
Lcy5g0151 | 231 | SUPERFAMILY | RING/U-box | 104 | 162 | - | - | |
Lcy5g0151 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g2340 | Lcy-Chr1:36522417 | Lcy5g0151 | Lcy-Chr5:1548651 | 1.73E-08 | dispersed | |
Lcy5g0151 | Lcy-Chr5:1548651 | Lcy9g1461 | Lcy-Chr9:39639486 | 2.47E-13 | dispersed | |
Lcy1g1521 | Lcy-Chr1:15002604 | Lcy5g0151 | Lcy-Chr5:1548651 | 1.00E-70 | wgd | |
Lcy10g2219 | Lcy-Chr10:46072880 | Lcy5g0151 | Lcy-Chr5:1548651 | 8.62E-75 | wgd | |
Lcy11g0131 | Lcy-Chr11:1417052 | Lcy5g0151 | Lcy-Chr5:1548651 | 6.29E-51 | wgd |
Pathway information
